CN181791

Overview
NameCN181791
Unique NameCN181791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.809e-67
Identity = 130/152 (85.53%), Postives = 138/152 (90.79%), Query Frame = -2
Query:  200 PKLTAQKRVIQRPRLLKVAKAVKSG-PTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 652
            P     K+   + + LKVAKAVKSG  T +KKAKK+RTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct:    3 PPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.433e-65
Identity = 125/150 (83.33%), Postives = 134/150 (89.33%), Query Frame = -2
Query:  200 KLTAQKRVIQRPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 649
            K    K+   + +  KVAKAVKSG T KKK++K+RT VTFHRPKTLKKDRNPKYPRISAP RNKLD Y ILKYPLTTESAMKKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    5 KADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.989e-65
Identity = 125/150 (83.33%), Postives = 134/150 (89.33%), Query Frame = -2
Query:  200 KLTAQKRVIQRPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 649
            K+   K+   + + LK AKAVKSG T  KK KK+RTSVTFHRP+TL KDRNPKYPRISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    5 KVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 9.989e-65
Identity = 124/150 (82.67%), Postives = 132/150 (88.00%), Query Frame = -2
Query:  200 KLTAQKRVIQRPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 649
            K+   K+   + + LK AKAVKSG  FKKK KK+RT VTFHRPKTL K R  KYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    5 KVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.958e-64
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = -2
Query:  200 KLTAQKRVIQRPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 649
            K+   K+   + + LK AKAVKSG   KK AKK+RT VTFHRPKTL   R PKYP+ISA PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:    5 KVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  200 RPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 619
            + + LK  KAV  G    KK KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   18 KAKALKAKKAVLKGVHSHKK-KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  200 RPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 619
            + + LK  KAV  G    KK KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   18 KAKALKAKKAVLKGVHSHKK-KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  200 RPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 619
            + + LK  KAV  G    KK KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   18 KAKALKAKKAVLKGVHSHKK-KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  200 RPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 619
            + + LK  KAV  G    KK KK+RTS TF RPKTL+  R PKYPR SAP RNKLDHY I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   18 KAKALKAKKAVLKGVHSHKK-KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CN181791 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = -2
Query:  200 PKLTAQKRVIQRPRLLKVAKAVKSGPTFKKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 652
            PK ++ K  + + +  K  KAV  G T  K  +++RTSVTF RPKTL+  R PKYPR S P   ++D Y+ L  PL TESAMKKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:   11 PKASSAKTQVAKAKSAK--KAVVKG-TSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158          
The following BLAST results are available for this feature:
BLAST of CN181791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23A_FRIAG2.809e-6785.5360S ribosomal protein L23A OS=Fritillaria agrestis... [more]
RL23A_TOBAC3.433e-6583.3360S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_DAUCA9.989e-6583.3360S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A1_ARATH9.989e-6582.6760S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
R23A2_ARATH4.958e-6482.0060S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
RL23A_RAT2.389e-5072.8660S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE2.389e-5072.8660S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN2.389e-5072.8660S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN2.389e-5072.8660S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR1.833e-4258.9460S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181791 ID=CN181791; Name=CN181791; organism=Citrus sinensis; type=EST; length=695bp
TTTTTTTTTTTTTTTAAGTGCAAGGATTTTGATTTAATGAGATGCAGTTA
ATGGCAGAACAAGTTTAACGATGATCTTAATAGGCATCCAATGCAAAAAC
TCAATATAAAAGATAGATCTGAGTACATATTTGAAAATAACCAAAACGAA
ATTGGAGTCCTAACAAAACTGTTGACAATACACACGAACTCACTCCTTAG
ATAATTCCAATCTTGTTGGCCACATCCAATGCATCATAATCCGGAGTCAG
CCTAACATATGCCTTCTTAGTTCCATCAGGTCTGATCAAAGTGTTGACTT
TCTTGGTCTGAATTTCGTACATTTTCTTGACGGCATCCTTGATCTTCCTC
TTATCAGCACGGATGTCAACAATGAAAACCAAGGTATTATTGTCCTCGAT
CTTCTTCATAGCTGATTCGGTAGTCAAGGGATACTTGAGAATTTGGTAGT
GGTCCAACTTGTTCCTCGGTGGAGCACTAATGCGGGGATACTTGGGGTTT
CTGTCCTTCTTCAGGGTCTTTGGCCTATGGAATGTAACTGAGGTCCGCAT
CTTCTTCGCCTTCTTCTTAAAAGTCGGCCCTGATTTCACAGCCTTGGCAA
CCTTTAGTAGCCTGGGCCTTTGGATCACCCTTTTTTGAGCTGTCAACTTT
GGGAGCCATTGGATTGGACTTGTCCTACGAAACACCTCTGAATCT
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