CN188723
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.636e-45 Identity = 106/171 (61.99%), Postives = 124/171 (72.51%), Query Frame = -2 Query: 236 QGQRPSG-RRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 745 Q QRP G RR G+Q +QQ PMMQ QM PRGR++RYP GRG G G + P G+ + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA AG +QLASL+L+ Sbjct: 481 QQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26 Identity = 78/170 (45.88%), Postives = 94/170 (55.29%), Query Frame = -2 Query: 251 QQGQRPSGRRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVG--GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 748 Q G R RR A Q Q Q Q + + R+ G G M G++P+P A +P P I LAS LA ASP++ MLG++LYPLVEQ EP AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A + DQ A Sbjct: 499 QPGPRVGFRRGANNMQQQ-----FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.964e-24 Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = -2 Query: 299 QQGQRPSGRRAA-GMQQNQQHVPMMQPQMLPRGRVYRYPS-GRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 748 Q G R RR A +QQ+ Q +M P R S GR D S+P + ++P+P D +++ + AP+ +PI L S+LA+ASP + MLGE LYPLVE+ EP AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 495 QTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.720e-20 Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = -2 Query: 230 QQGQRPSGRRAAGMQQNQQHVPM--MQPQMLPRGRVY-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 748 QQG R G + N Q +PM MQ +P G Y ++ GRG V PG+GG + YG +PL R + QP P+G L A AL+ A P+QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE EAL+AKV EA+ E ++N + + A P + +N Sbjct: 535 QQGGRGVGPNQQ-IPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.833e-20 Identity = 71/185 (38.38%), Postives = 91/185 (49.19%), Query Frame = -2 Query: 260 RPSGRRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSG-------RGMPDVS-----------MPGVGGMLPIPYGD-MAAMPLRDAPISQPV-------PIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 736 RP A M Q P QP P G + P G RG P+ + GV G P P G + P+ P ++P P A+ALA ASPE+Q+ MLGE +YP V +P+ A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q AG A+ Sbjct: 461 RPRYAPAGMMPQGMPMAPYGQPGQFPAGMM---PQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGA-PRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18 Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = -2 Query: 260 RGRVYRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 658 RG+V P G+GM G GG P P G + AA P A + P GAL A AL A+P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + + G PAD Sbjct: 599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17 Identity = 60/150 (40.00%), Postives = 81/150 (54.00%), Query Frame = -2 Query: 302 PSGRRAAGMQQNQQHVPMMQPQMLPRG-RVYRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 733 P G A GM + + P G R+ P+ G + VG +P G + MP R + P P G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL Sbjct: 492 PGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17 Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = -2 Query: 257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505 AS+LA+A P++Q+ MLGE LYPL+ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ ++ + A Q Sbjct: 544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17 Identity = 68/183 (37.16%), Postives = 88/183 (48.09%), Query Frame = -2 Query: 305 GQRPSGRRAAGMQQNQQHVPMMQ-----------------PQMLPRGRVYRYPSGRG----MPDVSM----PGVG---GMLPIPYGDMA------AMPLRDAPISQP---VPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 742 G P + GM NQQ P Q PQ + + + R GRG MP++ PG G G +P+ G M AP +P V G A AL+ A P QQ+ MLGE LYP ++ +P+ A K+TGMLLEM+ TE+L LLE EAL+AKV EA+ V Sbjct: 548 GPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.154e-16 Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -2 Query: 239 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 505 AS LA A P++Q+ MLGE +YP++ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL Q QA A + A SL Sbjct: 544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628 The following BLAST results are available for this feature:
BLAST of CN188723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188723 ID=CN188723; Name=CN188723; organism=Citrus sinensis; type=EST; length=749bpback to top |