CN188723

Overview
NameCN188723
Unique NameCN188723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2803 contig Csv1_Contig2803:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.636e-45
Identity = 106/171 (61.99%), Postives = 124/171 (72.51%), Query Frame = -2
Query:  236 QGQRPSG-RRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 745
            Q QRP G RR  G+Q +QQ  PMMQ QM PRGR++RYP GRG       G G + P   G+           + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA    AG   +QLASL+L+
Sbjct:  481 QQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.579e-26
Identity = 78/170 (45.88%), Postives = 94/170 (55.29%), Query Frame = -2
Query:  251 QQGQRPSGRRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSGRGMPDVSMPGVG--GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 748
            Q G R   RR A   Q Q      Q Q + +    R+  G G     M      G++P+P    A          +P P  I  LAS LA ASP++   MLG++LYPLVEQ EP  AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A      +  DQ A
Sbjct:  499 QPGPRVGFRRGANNMQQQ-----FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.964e-24
Identity = 74/154 (48.05%), Postives = 98/154 (63.64%), Query Frame = -2
Query:  299 QQGQRPSGRRAA-GMQQNQQHVPMMQPQMLPRGRVYRYPS-GRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 748
            Q G R   RR A  +QQ+ Q   +M     P  R     S GR   D S+P   +  ++P+P  D +++  + AP+   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  495 QTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.720e-20
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = -2
Query:  230 QQGQRPSGRRAAGMQQNQQHVPM--MQPQMLPRGRVY-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 748
            QQG R  G     +  N Q +PM  MQ   +P G  Y     ++  GRG   V  PG+GG +   YG     +PL          R   + QP    P+G L A AL+ A P+QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  EAL+AKV EA+    E ++N + +  A  P +        +N
Sbjct:  535 QQGGRGVGPNQQ-IPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.833e-20
Identity = 71/185 (38.38%), Postives = 91/185 (49.19%), Query Frame = -2
Query:  260 RPSGRRAAGMQQNQQHVPMMQPQMLPRGRVYRYPSG-------RGMPDVS-----------MPGVGGMLPIPYGD-MAAMPLRDAPISQPV-------PIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 736
            RP    A  M Q     P  QP   P G +   P G       RG P+ +             GV G  P P G  +   P+   P ++P        P    A+ALA ASPE+Q+ MLGE +YP V   +P+ A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q   AG  A+
Sbjct:  461 RPRYAPAGMMPQGMPMAPYGQPGQFPAGMM---PQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGA-PRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.610e-18
Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = -2
Query:  260 RGRVYRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 658
            RG+V   P G+GM      G GG    P P G    + AA P   A   +  P GAL A AL  A+P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +  G  PAD
Sbjct:  599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 60/150 (40.00%), Postives = 81/150 (54.00%), Query Frame = -2
Query:  302 PSGRRAAGMQQNQQHVPMMQPQMLPRG-RVYRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 733
            P G  A GM     +       + P G R+   P+  G  +     VG    +P G +     MP R    + P P  G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  492 PGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = -2
Query:  257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505
            AS+LA+A P++Q+ MLGE LYPL+ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+    ++ +   A Q
Sbjct:  544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.180e-17
Identity = 68/183 (37.16%), Postives = 88/183 (48.09%), Query Frame = -2
Query:  305 GQRPSGRRAAGMQQNQQHVPMMQ-----------------PQMLPRGRVYRYPSGRG----MPDVSM----PGVG---GMLPIPYGDMA------AMPLRDAPISQP---VPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 742
            G  P  +   GM  NQQ  P  Q                 PQ + + +  R   GRG    MP++      PG G   G +P+  G M             AP  +P   V  G  A AL+ A P QQ+ MLGE LYP ++  +P+ A K+TGMLLEM+ TE+L LLE  EAL+AKV EA+ V
Sbjct:  548 GPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730          
BLAST of CN188723 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.154e-16
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  239 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 505
            AS LA A P++Q+ MLGE +YP++ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL    Q  QA   A + A  SL
Sbjct:  544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628          
The following BLAST results are available for this feature:
BLAST of CN188723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP2_ARATH2.636e-4561.99Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH3.579e-2645.88Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.964e-2448.05Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI1.720e-2038.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA3.833e-2038.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL1.610e-1845.39Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE2.325e-1740.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR2.325e-1750.60Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_ASPOR5.180e-1737.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.154e-1650.56Embryonic polyadenylate-binding protein A OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188723 ID=CN188723; Name=CN188723; organism=Citrus sinensis; type=EST; length=749bp
TTTTTTTTTTTTTTTTAATCTTCAATGTCACAAATCCTCACCTTTTTCCT
GAAACTCTCAACAGTTAAACCCAAAAAAATAACCATAAAAATAAAAACCA
AAACCAAAACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTAT
AACCGTAACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAA
ATACTGCAGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGA
GGCTAGTTGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCC
TCAGAACCTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGAT
TCGAGCAAGTGCAAAACCTCAGTCTGATCCATCTCCAAAAGCATTCCCGT
AACCTTAGCTGCAGCATCAGGCTCCAGCTGTTCTACAAGTGGGTAGAGAT
TCTCTCCCAGCATCGTCCTCTGCTGCTCAGGAGAAGCATTTGCAAGGGCA
GAGGCCAAAGCCCCAATGGGAACTGGCTGTGAAATAGGGGCATCACGCAG
CGGCATAGCAGCCATGTCACCATATGGAATAGGCAGCATCCCTCCGACAC
CAGGCATGGAAACATCTGGCATGCCACGGCCTGACGGGTAGCGGTAGACA
CGCCCCCTTGGAAGCATCTGTGGCTGCATCATTGGAACATGCTGCTGGTT
CTGCTGCATGCCTGCTGCCCGTCTGCCACTAGGACGCTGACCCTGCTGC
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