CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECH1_HUMAN (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 94/214 (43.93%), Postives = 136/214 (63.55%), Query Frame = 2
Query:   29 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVKLVAE 664
            + SY+S+++   +    V+++ LNRP++RNA+++ F+ E  +  + + ++ +  A+V+SG G  F +GIDL  ++S        D  R S   R  I   Q+    IERC KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE
Sbjct:   52 DHSYESLRVT--SAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE 263          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECH1_PONAB (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Pongo abelii GN=ECH1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 92/214 (42.99%), Postives = 136/214 (63.55%), Query Frame = 2
Query:   29 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVKLVAE 664
            + SY+S+++   +    V+++ LNRP++RNA+++ F+ E  +  + + ++ +  A+V+SG G  F +G+DL  ++S        D  R S   R  I   Q+    IE+C KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE
Sbjct:   52 DHSYESLRVT--SAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGVDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIEKCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE 263          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECH1_MOUSE (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 87/198 (43.94%), Postives = 129/198 (65.15%), Query Frame = 2
Query:   29 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 619
            + +Y+SI++   +    V+++ LNRP +RNA++R F+ E  +    + ++ +  A+V+SG G  F SGIDL  ++S     +  D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+V+ACDIR+C++DAFF +KEVD+ + AD+GTLQRLP ++G  + + EL  + R+    EA + GLVSRVF
Sbjct:   51 DHNYESIQVT--SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVF 246          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECH1_RAT (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Rattus norvegicus GN=Ech1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.907e-42
Identity = 88/198 (44.44%), Postives = 128/198 (64.65%), Query Frame = 2
Query:   29 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 619
            + +Y+SI++   +    V+++ LNRP +RNA++R F+ E  +    + ++ +  A+V+SG G  F SGIDL  ++S        D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+++ACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + EL  T R+    EA + GLVSRVF
Sbjct:   51 DHNYESIQVT--SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVF 246          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECH1_DICDI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Dictyostelium discoideum GN=ech1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 81/210 (38.57%), Postives = 120/210 (57.14%), Query Frame = 2
Query:    5 FFTSAKQMEE-----SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 619
            FFT+A           YK +++E K  ++ V  L L RP Q N++  +F+ EF      +  +  +  ++L G G    +G++L  ++ +    +   + + +    + IR  Q ++  I +C KP IA IHGACIGGGVD++TACDIR CS DA FS++E  L+I ADLGTLQR+  IVG G A ELALTG+      A+   LV+ V+
Sbjct:    6 FFTNATPSTSILKITDYKYLRLE-KNDSTFVAELVLCRPKQYNSMDDDFYNEFISIYDEIQNDSKIRCVILRGEGKGLTAGLNLGKIAPLITGDSEVSQSQNNLDLFKMIRRWQASLDKINKCSKPTIALIHGACIGGGVDMITACDIRLCSSDAKFSIRETKLSIIADLGTLQRISKIVGSGFARELALTGKDIDAKTAERFNLVNHVY 214          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   71 NSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            N  +  + LNRP   NALS E        +  ++ N N+  ++L+GTG+  FC+G DLK    + +           ++    +  +Q     ++   +PVIA+I+G+ +GGG+++  ACD+R  ++ A   + E  LAI    G  QRLP ++G G A E   TGRR    EAKE+GLV  V
Sbjct:   11 NEHMALITLNRPQAANALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKE-----------DQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHV 182          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHM_CAEEL (Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 AFFTSAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            AF + A +M      IKIE       V  + LNRP   NAL  +  TE   AL  LD + +V AIV++G+   F +G D+K +++  +   +T  G F   +           TA+   +KPVIA+++G  +GGG ++   CDI +  + A F   E+++      G  QR     G   AME+ LTG      EAKE G+VS++F     + + VKL
Sbjct:   25 AFSSKAPEM------IKIEKVGEKQNVALIKLNRPKALNALCAQLMTELADALEVLDTDKSVGAIVITGSERAFAAGADIKEMTN--NEFATTFSGSFLSNW-----------TAVSDVKKPVIAAVNGFALGGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEAKEHGIVSKIFPADQVVGEAVKL 223          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 71/206 (34.47%), Postives = 107/206 (51.94%), Query Frame = 2
Query:   35 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVK 652
            +++ I  E K  NS V  + LNRP   NAL      E  +AL + +Q+P V AIVL+G    F +G D+K + +       T +  +S KF        D +T   R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++
Sbjct:   32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQN------RTFQDCYSSKFLSH----WDHIT---RVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVEKLVEEAIQ 224          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 68/206 (33.01%), Postives = 105/206 (50.97%), Query Frame = 2
Query:   35 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVK 652
            +++ I  E K  NS V  + LNRP   NAL      E  +AL + +++P V AIVL+G    F +G D+K + + T     +  G+F   +             I R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++
Sbjct:   32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYS--GKFLSHWDH-----------ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQ 224          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCTU (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   35 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            +Y++I +E    + RV  + LNRP   NAL+ +   E   A + LD +P++ AI+++G+   F +G D+K ++ +T          F++ F  D       + A+   R P IA++ G  +GGG ++   CD+   +  A F   E+ L +   +G  QRL   +G   AM+L LTGR     EA+  GLVSRV
Sbjct:    2 TYETILVER---DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLT----------FADAFTADFFATWGKLAAV---RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179          
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ECH1_HUMAN2.804e-4343.93Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_PONAB8.159e-4342.99Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_MOUSE3.100e-4243.94Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_RAT6.907e-4244.44Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_DICDI2.379e-3438.57Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
YNGF_BACSU1.546e-2533.88Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
ECHM_CAEEL8.483e-2433.03Probable enoyl-CoA hydratase, mitochondrial OS=Cae... [more]
ECHM_MOUSE1.447e-2334.47Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
ECHM_RAT7.181e-2333.01Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
ECHA8_MYCTU1.225e-2232.47Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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