CN188716

Overview
NameCN188716
Unique NameCN188716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9235 contig Csv1_Contig9235:340..1043. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 66/192 (34.38%), Postives = 101/192 (52.60%), Query Frame = 1
Query:    1 IETLKWRSTYRPEQIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 576
            ++TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF  P        +  Y  ++ L + FGG     Y HE++   +++
Sbjct:  657 VDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP--------LDRYVPKDQLDSNFGGSLHFEYHHEKYWPQLVE 839          
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 1
Query:    7 TLKWRSTY--------RPEQIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 576
            TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F  P  K        Y  +  L + +GG     Y+H+ +   +++
Sbjct:  111 TLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVK--------YVPKNELDSLYGGDLKFKYNHDVYWPALVE 306          
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 66/203 (32.51%), Postives = 98/203 (48.28%), Query Frame = 1
Query:    4 ETLKWRS----TYRPEQ---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 576
            +TL WR     T+  E    +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F  P          ++ +   L   + G     Y HE +   M++
Sbjct:  115 KTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIFDEP--------FENHIEPSQLDALYNGLLDFKYKHEVYWPDMVK 308          
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 53/195 (27.18%), Postives = 101/195 (51.79%), Query Frame = 1
Query:    4 ETLKWRSTYRPEQIRWN-EIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMR--HLVYLIENAILNL--PEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMS---SYFDEENLPTEFGGKATLHYDHEEFSK 564
            +TL+WR  +RP+ I+   +I   G  G ++     D+ GR ++   P      ++ ++++  +LVY +E     +  P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+  K  D     +    Y D ENL    GG    +Y+ +E+ K
Sbjct:   96 DTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNIDEYLK 288          
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 52/200 (26.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:    4 ETLKWRSTYRPEQI--RWNEIAVEGETGKLFRAGFH--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQM-------AWLIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGG--KATLH 540
            ++L+WR  +R + +   + E AV  E    F  G+H  D+ GR + ILR       G+  +  ++  +R  +++ E  I  + E  E++       + L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F  P  +   + ++ Y DEE +P   GG  K  +H
Sbjct:  265 DSLQWRKEHRMDSLLEEYTEPAVVVEH---FPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLRLALHICEEGIQKINESAERLDKPVLNWSLLVDLEGLSMRHLWRPGIKALLYIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCEHMKDGLAQYIDEEIVPDFLGGPCKTMIH 461          
BLAST of CN188716 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 54/200 (27.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:    4 ETLKWRSTYRPEQI--RWNEIAVEGETGKLFRAGFH--DRHGRTVLILR------PGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMA-----W--LIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGG--KATLH 540
            ++L+WR  +R + +   +++ AV  E    F  G+H  D+ GR V ILR       G+  +  +D  +R  +++ E  I  + E  E++      W  L+D  G S+       I++    I  ++ +YPE +    +   PR+F   W +V  F+D  T  K  F  P      + ++ Y DEE +P   GG  K  +H
Sbjct:  267 DSLRWRREHRIDALLAEYSKPAVVVEH---FPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCKTMIH 463          
The following BLAST results are available for this feature:
BLAST of CN188716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YJX4_SCHPO1.155e-2334.38CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST3.146e-2132.20Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
PDR17_YEAST7.253e-1832.51Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
RSC5_DICDI9.472e-1827.18Random slug protein 5 OS=Dictyostelium discoideum ... [more]
RETM_DROPS8.587e-1126.00Protein real-time OS=Drosophila pseudoobscura pseu... [more]
RETM_DROME8.587e-1127.00Protein real-time OS=Drosophila melanogaster GN=re... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188716 ID=CN188716; Name=CN188716; organism=Citrus sinensis; type=EST; length=705bp
ATTGAGACACTCAAATGGAGGTCAACCTACAGGCCGGAGCAAATCCGTTG
GAATGAAATTGCAGTTGAAGGTGAGACCGGAAAGTTATTTAGAGCTGGTT
TTCATGACCGACATGGCAGGACTGTTCTCATATTGAGACCCGGAATGCAG
AACACTGCATCAATAGACAATCAGATGAGACACCTAGTCTATCTCATAGA
GAATGCTATCCTAAACCTTCCAGAGGGTCAGGAACAAATGGCATGGTTAA
TAGACTTCACTGGGTGGTCATTGAGCACCAGCGTCCCTATCAGGTCTGCT
CGAGAAACTATCAATATATTACAAAATCACTACCCTGAAAGGCTGGCCAT
AGCATTTCTCTACAATCCCCCACGGATTTTTGAAGCATTTTGGAAGGTTG
TCAAGTATTTCTTGGATGCCAAAACATTCCAAAAGGTGAAATTTGTATAT
CCAAAGAATAAAGACAGCGTGGAAGTCATGAGTTCATATTTTGATGAGGA
AAATCTTCCGACTGAGTTTGGAGGAAAGGCCACATTGCATTATGACCATG
AAGAGTTTTCCAAATTAATGATTCAAGATGATTCAAAATCAGCAACATTG
TGGGGATTTGATGACAAACTCCAACGCGTTGGTAATGGGCATTCTGGAGC
TGAAGTGGCTCCAGAGCCAGCCAGTTGAGCTGCTCTGGTATCATTGTAAT
AAATG
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