CN188715

Overview
NameCN188715
Unique NameCN188715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188715 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = -2
Query:  305 HDRHGRTGLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 778
            +D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF  P        +  Y  ++ L + FGG     Y HE++   +++
Sbjct:  690 YDKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP--------LDRYVPKDQLDSNFGGSLHFEYHHEKYWPQLVE 839          
BLAST of CN188715 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = -2
Query:  305 HDRHGRTGLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 778
            ++   R  L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F  P  K        Y  +  L + +GG     Y+H+ +   +++
Sbjct:  150 YENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVK--------YVPKNELDSLYGGDLKFKYNHDVYWPALVE 306          
BLAST of CN188715 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.179e-13
Identity = 49/153 (32.03%), Postives = 74/153 (48.37%), Query Frame = -2
Query:  305 LRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 748
            ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F  P          ++ +   L   + G     Y HE +   M++
Sbjct:  164 MKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIFDEP--------FENHIEPSQLDALYNGLLDFKYKHEVYWPDMVK 308          
BLAST of CN188715 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 43/160 (26.88%), Postives = 82/160 (51.25%), Query Frame = -2
Query:  317 DRHGRTGLILRPGMQNTASIDNQMR--HLVYLIENAILNL--PEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMS---SYFDEENLPTEFGGKATLHYDHEEFSK 775
            D+ GR  +   P      ++ ++++  +LVY +E     +  P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+  K  D     +    Y D ENL    GG    +Y+ +E+ K
Sbjct:  130 DKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNIDEYLK 288          
The following BLAST results are available for this feature:
BLAST of CN188715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO2.657e-1934.81CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST2.487e-1732.73Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
PDR17_YEAST2.179e-1332.03Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
RSC5_DICDI4.854e-1326.88Random slug protein 5 OS=Dictyostelium discoideum ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188715 ID=CN188715; Name=CN188715; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTTCATCATATGCATGTTTTATTCTACTAATTCCTT
TTACGAGTTATGAGCGCCAATGGAAGAAATACAACATCCTTCTTCGCGCA
GTAACTATAGCCCATCGGGAGCATCCCAAGATGATAAATTGATAATGTTG
CTAAAATTTTGCCTTAAGTCCCTATCATTTATTACAATGATACCAGAGCA
GCTCAACTGGCTGGCTCTGGAGCCACTTCAGCTCCAGAATGCCCATTACC
AACGCGTTGGAGTTTGTCATCAAATCCCCACAATGTTGCTGATTTTGAAT
CATCTTGAATCATTAATTTGGAAAACTCTTCATGGTCATAATGCAATGTG
GCCTTTCCTCCAAACTCAGTCGGAAGATTTTCCTCATCAAAATATGAACT
CATGACTTCCACGCTGTCTTTATTCTTTGGATATACAAATTTCACCTTTT
GGAATGTTTTGGCATCCAAGAAATACTTGACAACCTTCCAAAATGCTTCA
AAAATCCGTGGGGGATTGTAGAGAAATGCTATGGCCAGCCTTTCAGGGTA
GTGATTTTGTAATATATTGATAGTTTCTCGAGCAGACCTGATAGGGACGC
TGGTGCTCAATGACCACCCAGTGAAGTCTATTAACCATGCCATTTGTTCC
TGACCCTCTGGAAGGTTTAGGATAGCATTCTCTATGAGATAGACTAGGTG
TCTCATCTGATTGTCTATTGATGCAGTGTTCTGCATTCCGGGTCTCAATA
TGAGACCAGTCCTGCCATGTCGGTCATGAAAA
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