CN188713

Overview
NameCN188713
Unique NameCN188713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_RAT (WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_MOUSE (WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_HUMAN (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_CRIGR (WD40 repeat-containing protein SMU1 OS=Cricetulus griseus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_CHICK (WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_BOVIN (WD40 repeat-containing protein SMU1 OS=Bos taurus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_XENTR (WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis GN=smu1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.785e-44
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_XENLA (WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.785e-44
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  395 GTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_DANRE (WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.750e-44
Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = -2 
Query:  368 GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 724
            G D +VN+V L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  395 GTDITVNNVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDYVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188713 vs. ExPASy Swiss-Prot
Match: SMU1_DICDI (WD40 repeat-containing protein smu1 OS=Dictyostelium discoideum GN=smu1 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = -2 
Query:  371 DASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 718
            D S+ S+ +  KNP+ ++VCN +S I I++ + Q + K+F+S   +   F+   +SP   ++Y V ED  LY F   SG L +  K+H+++VI ++HHP +NLLAT G DC +K+WK
Sbjct:  408 DISIRSITILLKNPEFLLVCN-SSQISIVSMKSQTISKTFTSENSK--TFLVCTLSPLQNYLYAVDEDNILYTFDFNSGSLLNKFKIHDQEVISISHHPTKNLLATTGSDCLLKIWK 521
The following BLAST results are available for this feature:
BLAST of CN188713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SMU1_RAT7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Rattus norv... [more]
SMU1_MOUSE7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Mus musculu... [more]
SMU1_HUMAN7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]
SMU1_CRIGR7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Cricetulus ... [more]
SMU1_CHICK7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Gallus gall... [more]
SMU1_BOVIN7.328e-4567.23WD40 repeat-containing protein SMU1 OS=Bos taurus ... [more]
SMU1_XENTR2.785e-4466.39WD40 repeat-containing protein SMU1 OS=Xenopus tro... [more]
SMU1_XENLA2.785e-4466.39WD40 repeat-containing protein SMU1 OS=Xenopus lae... [more]
SMU1_DANRE4.750e-4465.55WD40 repeat-containing protein SMU1 OS=Danio rerio... [more]
SMU1_DICDI2.374e-1940.17WD40 repeat-containing protein smu1 OS=Dictyosteli... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188713 ID=CN188713; Name=CN188713; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTTTTTTTTTTTAAGAAAGAAATAGTGTGCTTTTCCTTTTAATAA
TATTAATACTCTCAACAGTTTAGTAATAACCTAAATCTCAATATTATGTG
TCTCTCATTTTTACAATTTTCATTTAGTTCAAAGGTAAAACAAAGATCGA
CTATCCAATTTAACACTATCCAAGTATTTGAATTGGAAAAAGTCCTCCCC
CCCGTGAACAAAATAATAATACAAGAGAAAACCCCTGATCTTTGATTGAA
ATTTGGTTCTTCCAACCCATGCTCCCCCAGTGAATAATGGGTCTAATGAA
TGAAGACAACATTCCAAGAAATTACAGAAACATTTTTCATTTCAACGGAA
GCAAATACAGGGAATCAAGGCTTCCATAATTTCATTGTGCAATCTTCACC
ATATGTTGCCAGAAGGTTTCTATGGGGATGATGAGTCACACCAATTACAT
CCTTTTCATGGACCTTCATTAGATGCTCTAGTTTACCAGACTGATGGCTG
AAGCAGTACAAGTTCCTGTCTTCACCAACACAATAGATCCATTCACCTTT
CGGTGAAACACAAGCAGCAACAAAATCTCCACCTTCTCTTTTACCAGAAG
AAAAACTCTTCACAACCTGTCCTTGAGGAGTCATTATGTATATTGAGGAT
GTCTTATTACATACGACTATGTGATCAGGATTCTTTGGGAATAAATGGAC
AGAGTTCACTGAAGCATCACCTCCCCTCAAA
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