CN181760

Overview
NameCN181760
Unique NameCN181760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.917e-20
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 145
            +SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:  112 VSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.656e-19
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 145
            ISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:  112 ISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.788e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 142
            ISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:  112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.393e-17
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 145
            +SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:  112 VSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.103e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 145
            +SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:  112 VSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.030e-17
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 145
            +SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:  112 VSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CN181760 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 34/47 (72.34%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 139
            +SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:  111 VSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
The following BLAST results are available for this feature:
BLAST of CN181760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RS11_EUPES3.917e-2093.7540S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN5.656e-1993.7540S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE4.788e-1889.3640S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH1.393e-1785.4240S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH3.103e-1785.7140S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH9.030e-1785.4240S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE3.926e-1272.3440S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181760 ID=CN181760; Name=CN181760; organism=Citrus sinensis; type=EST; length=284bp
GATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCC
AGTGCAGGCCTTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATA
CCTGCTGGGTCTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGT
TGGAGTCGGCTGTTTCCAACATTAAATTTTTGCTACTTTTGTTCCATGGG
ACTTTGTTATTTGGATTTTTGCATTGGGAATTAAATCCTGTTATGTCCTA
ATATATATTTTCTAGAGAAGTTAATTTTTCAAAA
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