CN188703

Overview
NameCN188703
Unique NameCN188703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.412e-35
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   70 AAPKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            A P TESVQCF RK TAVAVT+CKRGRGLIK+NG PIELV P ILR+KAFEPILLLGRHRF GVDM+IR +GGG TSQIYAIRQSI+K+L
Sbjct:    2 ATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKAL 91          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            ESVQCF RK TAVAVT+CKRGRGLIKINGCPIELV+P ILRFKA EPILLLGR RF GVDM+IR +GGGHTSQIYAIRQSI+K+L
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKAL 91          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.860e-34
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1
Query:   76 PKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            P TESVQCF RK TAVAVT+CKRG GLIK+NGCPIEL  P ILRFK FEPILLLG+HRF GV+M+IR  GGGHTSQ+YAIRQSI+K+L
Sbjct:    5 PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.735e-34
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1
Query:   76 PKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            P TESVQCF RK TAVAVT+CKRG GLIK+NGCPIEL  P ILRFK FEP+LLLG+HRF GV+M+IR  GGGHTSQ+YAIRQSI+K+L
Sbjct:    5 PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.017e-31
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1
Query:   76 PKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            P  ESVQCF RK TA AVTYCKRG G+IK+NG PIEL  P ILRFK FEP+LLLG+HRF GVDM+IR  GGG+TS++YAIRQSI+K+L
Sbjct:    5 PAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.624e-29
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            ESVQCF RK TAVAVTYC+RGRGLI++   PIELV+P ILR+KAFEP+LLLGR +F GVDM+IR +GGG+TSQIYAIRQSI+K+L
Sbjct:    5 ESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKAL 88          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.059e-29
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:   64 ATAAPKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            A   P   +VQCF RK TAVAV+YCK GRGLIK+NG PIEL+ P +LR KAFEPILL GR RF  +DM+IR +GGG TSQIYAIRQ+I+K+L
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKAL 95          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.059e-29
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:   64 ATAAPKTESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            A   P   +VQCF RK TAVAV+YCK GRGLIK+NG PIEL+ P +LR KAFEPILL GR RF  +DM+IR +GGG TSQIYAIRQ+I+K+L
Sbjct:    4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKAL 95          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.890e-26
Identity = 53/85 (62.35%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +QIYAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKAL 92          
BLAST of CN188703 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 4.890e-26
Identity = 53/85 (62.35%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   85 ESVQCFRRKNTAVAVTYCKRGRGLIKINGCPIELVDP*ILRFKAFEPILLLGRHRFNGVDMKIRGQGGGHTSQIYAIRQSISKSL 339
            +SVQ F RK TA AV +CKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RF GVD+++R +GGGH +QIYAIRQSISK+L
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKAL 92          
The following BLAST results are available for this feature:
BLAST of CN188703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_FRIAG4.412e-3581.1140S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_GOSHI5.762e-3584.7140S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS161_ARATH2.860e-3478.4140S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH3.735e-3477.2740S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS162_ARATH1.017e-3172.7340S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU1.624e-2975.2940S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ8.059e-2967.3940S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI8.059e-2967.3940S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_RAT4.890e-2662.3540S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG4.890e-2662.3540S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188703 ID=CN188703; Name=CN188703; organism=Citrus sinensis; type=EST; length=352bp
ACGTTTTTCAAGCACCCAGGACTCACACAACACAAACACACACTAAGCAC
TGATCCCAACCTGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCT
TCCGCCGCAAAAATACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGC
GGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTTGTGGACCCATAGAT
CCTGCGTTTCAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTT
TCAACGGAGTAGACATGAAGATCCGCGGCCAGGGCGGAGGCCACACATCT
CAGATCTACGCTATACGCCAGAGCATCTCCAAGAGCCTTGGTCGCGTTTT
AT
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