CN181727

Overview
NameCN181727
Unique NameCN181727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12604 contig Csv1_Contig12604:28..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.273e-66
Identity = 118/184 (64.13%), Postives = 147/184 (79.89%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P+DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EKR +   ++ K++EKV
Sbjct:   72 PADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.113e-65
Identity = 117/184 (63.59%), Postives = 146/184 (79.35%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ +   ++ K++EKV
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.113e-65
Identity = 117/184 (63.59%), Postives = 146/184 (79.35%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ +   ++ K++EKV
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1A_RAT (Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.208e-62
Identity = 109/184 (59.24%), Postives = 145/184 (78.80%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +  ++ K+++KV
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1A_HUMAN (Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.208e-62
Identity = 109/184 (59.24%), Postives = 145/184 (78.80%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +  ++ K+++KV
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1A_MOUSE (Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.495e-62
Identity = 109/184 (59.24%), Postives = 145/184 (78.80%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +  ++ K+++KV
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKDAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1A_CRIGR (Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.727e-61
Identity = 108/184 (58.70%), Postives = 144/184 (78.26%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEKV 661
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTY +VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +  ++ K+++KV
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYPIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKV 253          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 112/183 (61.20%), Postives = 141/183 (77.05%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYA-DASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQE 655
            P  RPVRVYADG++DLFH GH R LEQAKK FPN +L+VG  ND+ TH+ KG TVM + ER E+LRHCKWVDEV+ +APWV+T EFL++H+IDFVAHD +PYA D SG   D+Y  VK  GKF  TKRT+G+STSD+I RI++DY+QYVMRNL RG +RK+L VS  K+  L +   +K L++
Sbjct:   97 PEGRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYASDDSG---DIYLPVKKVGKFIPTKRTEGVSTSDLITRIIRDYDQYVMRNLARGVNRKELNVSLFKKNELDLRHHIKVLRD 276          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.506e-56
Identity = 95/181 (52.49%), Postives = 138/181 (76.24%), Query Frame = 2
Query:  110 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQ 652
            P+DRP+R+YADG++DLFH GH + LEQ KK+FPN  L+VG  +D+ THK KG TV+T+ +R E+L HC+WVDEV+P+APW VT EFL +H+ID+VAHD +PY  A     D+Y+ +K  GKF  T+RT+G+STSDII +I++DY++Y+MRN  RG +R++L VS++K+  L+    + + +
Sbjct:   99 PTDRPIRIYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGLTVLTDKQRCETLTHCRWVDEVVPNAPWCVTPEFLLEHKIDYVAHDDIPYVSAD--SDDIYKPIKEMGKFLTTQRTNGVSTSDIITKIIRDYDKYLMRNFARGATRQELNVSWLKKNELEFKKHINEFR 277          
BLAST of CN181727 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 95/180 (52.78%), Postives = 132/180 (73.33%), Query Frame = 2
Query:  119 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLKVNMKLKKLQEK 658
            RPVR+YADGIYDLFH GHA  L Q KK FPN YL+VG C D  THK+KG+TV +E+ERY+ +RHC++VDEV  +APW  T EFL   ++DF+AHD++PY   +   +D+YE  +  G F ET+RT+G+STSD++ RI++DY++YV RNL RGYS K+L V ++   + ++  K+  L+ K
Sbjct:   79 RPVRIYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTVTSEEERYDGVRHCRYVDEVYREAPWFCTVEFLKNLKVDFIAHDAIPY--VAPGEEDLYEKFRREGMFLETERTEGVSTSDVVCRIIRDYDKYVRRNLQRGYSPKELNVGFLAASKYQIQNKVDSLKSK 256          
The following BLAST results are available for this feature:
BLAST of CN181727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PCY1B_HUMAN6.273e-6664.13Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
PCY1B_RAT3.113e-6563.59Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE3.113e-6563.59Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1A_RAT4.208e-6259.24Choline-phosphate cytidylyltransferase A OS=Rattus... [more]
PCY1A_HUMAN4.208e-6259.24Choline-phosphate cytidylyltransferase A OS=Homo s... [more]
PCY1A_MOUSE5.495e-6259.24Choline-phosphate cytidylyltransferase A OS=Mus mu... [more]
PCY1A_CRIGR2.727e-6158.70Choline-phosphate cytidylyltransferase A OS=Cricet... [more]
PCY1_SCHPO6.076e-6161.20Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1_YEAST4.506e-5652.49Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
PCY1_CAEEL1.712e-5552.78Putative choline-phosphate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181727 ID=CN181727; Name=CN181727; organism=Citrus sinensis; type=EST; length=661bp
GAGGAGAACTCTTCGAATCGAGGAGAAGCATAACGAGGAGAACACCAATA
ACAGCAGCGAAAAAATGAGTAACGCAAATTCGAATAATTCAAATTCGACT
GATACAGCGCCGTCTGATCGCCCCGTTAGAGTCTACGCCGATGGGATCTA
CGATCTTTTCCATTTCGGCCACGCTCGCTCCCTTGAACAAGCCAAGAAAT
CGTTTCCAAACACCTACCTCCTTGTCGGATGCTGCAATGATGAAACTACT
CATAAGTTTAAGGGCAAAACTGTTATGACAGAGGATGAGCGCTACGAATC
TCTTCGTCATTGCAAATGGGTGGATGAAGTCATTCCCGATGCACCTTGGG
TGGTCACGCAAGAATTTCTTGACAAGCACCAGATTGACTTTGTGGCTCAT
GACTCCCTTCCTTATGCCGATGCCAGTGGTGCCGGAAAAGATGTTTATGA
ATTTGTTAAAGCTGCTGGGAAGTTTAAGGAAACAAAACGAACTGATGGGA
TTTCAACATCAGACATTATTATGAGAATTGTTAAAGACTATAACCAGTAT
GTGATGCGTAACTTGGATCGAGGATATTCAAGAAAAGACCTTGGTGTTAG
CTATGTAAAGGAAAAACGGCTGAAGGTTAACATGAAATTAAAGAAACTGC
AAGAGAAAGTG
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