CN181704

Overview
NameCN181704
Unique NameCN181704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181704_ssr80 microsatellite CN181704_ssr80:80..103. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1902 contig Csv1_Contig1902:76..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181704 vs. ExPASy Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = -1 
Query:  328 PQNQQQQLTIFYNGQVCIC-DVTEFQAKAILLLASREMEPASPAN---PESQLYS------PNSGLSMKRSLQRFLQKRKHRSLATSPY 564
            P  + Q++TIFYNG++C   DVT  QA++I+ +ASREM+  S +N   P ++  S      PN   SMK+SLQ FLQKRK R  ATSPY
Sbjct:   39 PNEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATSPY 127
The following BLAST results are available for this feature:
BLAST of CN181704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF5A_ARATH3.578e-1349.44Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181704 ID=CN181704; Name=CN181704; organism=Citrus sinensis; type=EST; length=657bp
GAGGCATTTAGATATAACCTTCACCGATCCCTCACAACACTGATTCCACA
GGGGTAAACCCAAATTACAAATTACGAAAAAAGAAAGAAAGAAAGAAAGA
AAGAATCTGTATTCTGTAATGATGATTAAATTCCAATGGGTAACCCTATT
TATACCCCACAAGTAGTGATGAATCCATCAAATCAATAGGGTACCCCAGG
AGAAATATAAATCGATCTCCACTTCTTGTCTCAAATCAATATACATTCCC
CATCTGACGATCGTTATTTGTTACAAAAGAACCCGCAGATACATATATTG
AGTTAATAATTCGATGGAATGCTTTTAATAAGGGGATGTGGCTAAGCTCC
TGTGCTTTCTTTTTTGGAGGAAACGTTGCAATGATCTCTTCATTGAAAGA
CCCGAATTGGGGCTGTATAATTGAGATTCAGGATTCGCCGGTGATGCCGG
TTCCATTTCTCTACTTGCAAGCAATAAGATCGCTTTAGCCTGAAATTCCG
TGACATCACAAATGCAAACTTGTCCGTTGTAGAAGATTGTTAACTGCTGC
TGTTGATTTTGCGGGCTCACGCTTGACTCTCCCATAGTCAAGTTGTGACC
GTAGCCGGCGGCGAGGCTGAAATCTTCAGAAGAAAGAGAGCCAGAATAAG
GAAGAAG
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