CN188679

Overview
NameCN188679
Unique NameCN188679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: Y1280_ARATH (Uncharacterized protein At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = -3
Query:  327 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDIYKHFGSEN 665
            N L RAGF+ P VDVD+Y VKYK A++LIEHLR MGETNA  +RNKILNRETA+ATAAIYDSMFA EDG+IPATFQVIYMTGW EH   P+ KRRG A VSF D+ K FG ++
Sbjct:  243 NLLTRAGFSLPGVDVDEYVVKYKRAMDLIEHLRAMGETNALLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATVSFTDLQKQFGGQS 355          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_DANRE (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Danio rerio GN=zgc:162919 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = -3
Query:  345 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDIYK 665
            N L +AGF    VD+D+  V Y   LE++  L+GMGE+N  + R  +L R+T LA AAIY  M+  EDGS+PATFQ++YM GW  H  Q KP +RG A VSF D+ K
Sbjct:  207 NLLGQAGFNMLTVDIDEVQVNYPGMLEVMRDLQGMGESNCAWNRKLLLQRDTMLAAAAIYKEMYGNEDGSVPATFQILYMIGWKPHDSQAKPAKRGSANVSFADLSK 313          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_RAT (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = -3
Query:  351 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDI 665
            + L RAGF    VD D+  V Y    EL+E L+GMGE+N  + R  +L+R+T LA AA+Y  M++ EDGSIPAT+Q+ +M GW  H  Q +P  RG A VSF D+
Sbjct:  227 HLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLKGMGESNCSWNRKALLHRDTMLAAAAVYREMYSNEDGSIPATYQIYHMIGWKYHDSQARPAERGSATVSFGDL 331          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_PONAB (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = -3
Query:  345 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDIYK 665
            + L RAGF    VD D+  V Y    EL+E L+GMGE+N  + R  +L+R+T LA AA+Y  M+  EDGS+PAT+Q+ YM GW  H  Q +P  RG A VSF ++ K
Sbjct:  227 HLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCSWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELGK 333          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_MOUSE (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = -3
Query:  345 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDIYK 665
            + L RAGF    VD D+  V Y    EL+E L+GMGE+N  + R  +L+R+T LA AA+Y  M+  EDGSIPATFQ+ +M GW  H  Q +P  RG A VSF ++ K
Sbjct:  227 HLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLKGMGESNCSWNRKALLHRDTMLAAAAVYREMYRNEDGSIPATFQIYHMIGWKYHDSQARPAERGSATVSFGELAK 333          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_HUMAN (Probable methyltransferase C20orf7, mitochondrial OS=Homo sapiens GN=C20orf7 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = -3
Query:  345 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAEDGSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDIYK 665
            + L RAGF    VD D+  V Y    EL+E L+GMGE+N  + R  +L+R+T LA AA+Y  M+  EDGS+PAT+Q+ YM GW  H  Q +P  RG A VSF ++ K
Sbjct:  227 HLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELGK 333          
BLAST of CN188679 vs. ExPASy Swiss-Prot
Match: CT007_DICDI (Probable methyltransferase DDB_G0287769, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0287769 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  351 NFLARAGFTFPRVDVDQYTVKYKSALELIEHLRGMGETNAFFQRNKILNRETALATAAIYDSMFAAED-GSIPATFQVIYMTGWGEHYFQPKPKRRGFAPVSFKDI 665
            N L++  +T P VD ++ T+ Y +   L+  L+ MGE NA  +R    +++T LA +AIY  ++  ED  SIPATFQ+IY+ GW  H  Q KP +RG A   F +I
Sbjct:  233 NILSKNRYTLPTVDTEKITINYDNMFVLMRDLQNMGENNAILKRRNYTSKDTFLAASAIYKHLYGNEDNNSIPATFQIIYLIGWAPHESQQKPLQRGSAKKHFSEI 338          
The following BLAST results are available for this feature:
BLAST of CN188679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1280_ARATH1.855e-4171.68Uncharacterized protein At1g22800 OS=Arabidopsis t... [more]
CT007_DANRE1.208e-2450.47Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_RAT1.929e-2248.57Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_PONAB1.929e-2247.66Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_MOUSE1.929e-2248.60Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_HUMAN1.929e-2247.66Probable methyltransferase C20orf7, mitochondrial ... [more]
CT007_DICDI6.420e-1841.51Probable methyltransferase DDB_G0287769, mitochond... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006I20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188679 ID=CN188679; Name=CN188679; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTCCAAGGAATCTTTTTTCTTGAAATATCAAAGTA
AAAAACACAAATTCAATAATTTAAAAACTAAATTTTGGGCTAACTATATC
CCTATTTTGGAAAAAAAGTTGATGATAATTATTCATGCCTGACTATGATC
GGAATCTAAATAAAAACAACTAACGCTGGGATTGTAATCTAAATAAAAAC
TACTACATGCTAATAGGGGAAAACACTATTACAACTCTCTCAATCTGTAT
AAACTAATTTCAAAAAACTTGCCTCAAACTGGATTAAAAATGGGCTTGAA
TGGGCTTAACTCGGTTGGGCAAATTGATTTTCACTTCCAAAATGTTTATA
AATATCCTTGAATGATACCGGGGCAAATCCCCTTCTTTTTGGTTTTGGTT
GGAAATAATGTTCCCCCCATCCTGTCATGTATATCACCTGAAAGGTTGCA
GGGATGGACCCATCTTCTGCTGCAAACATGGAATCATATATAGCGGCTGT
TGCAAGGGCTGTTTCTCTATTAAGGATTTTATTCCTTTGAAAAAAAGCAT
TGGTTTCACCCATCCCACGCAAATGTTCTATCAGCTCCAGTGCGCTTTTA
TATTTAACAGTGTATTGATCAACATCAACCCTAGGAAAAGTGAATCCTGC
TCTGGCCAAAAAATTAC
back to top