CN181674

Overview
NameCN181674
Unique NameCN181674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181674_ssr213 microsatellite CN181674_ssr213:213..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10009 contig Csv1_Contig10009:371..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.230e-56
Identity = 116/162 (71.60%), Postives = 127/162 (78.40%), Query Frame = 3
Query:  147 PTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPPRAHQAPQ 632
            PT SHLGF N ++QL  F+  +          R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN+FDLMYEQVKA+K+G +VEKP        L  P   + P+
Sbjct:    9 PTTSHLGF-NQKKQL--FFCNKSAYKRVSFSSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPELIKPPK 166          

HSP 2 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query:  565 LKSPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR 675
            ++ PIYNHVTGLLD PELIKPPKILVIEGLHPM+D+R
Sbjct:  144 VEKPIYNHVTGLLDAPELIKPPKILVIEGLHPMFDSR 180          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 109/170 (64.12%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  132 CSLYS-PTKSHLGFFNNQRQLAVFYN--KRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPPRAHQAPQ 632
            C++Y+ PT +HLG   NQ    VF+N  +           R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDD+HSLDR GRK + VTALDP+AN+FDLMYEQVKA+K+G +V+KP        L PP   Q P+
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFHSLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171          

HSP 2 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1
Query:  574 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR 675
            PIYNHV+GLLDPPELI+PPKILVIEGLHPMYDAR
Sbjct:  152 PIYNHVSGLLDPPELIQPPKILVIEGLHPMYDAR 185          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.833e-50
Identity = 107/172 (62.21%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  117 SLNSPCSLYSPTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPPRAHQAPQ 632
            SL SPC+    T  + GF  NQ    +F+  R               ++C+    Q IVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP+AN+FDLMYEQVKA+K+G ++EKP        L P    Q P+
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNTRHGARTFQVSCAV--EQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQPPK 173          

HSP 2 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  565 LKSPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR 675
            ++ PIYNHVTGLLDP ELI+PPKI VIEGLHPMYD R
Sbjct:  151 IEKPIYNHVTGLLDPAELIQPPKIFVIEGLHPMYDER 187          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.587e-48
Identity = 96/126 (76.19%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  255 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPPRAHQAPQ 632
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGGAA+PPKGGNPDSNTLISDTTTVICLDDYHSLDR GRKE+ VTALDPRAN+FDLMYEQVKA+K+G++VEKP        L PP   Q P+
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQPPK 165          

HSP 2 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query:  565 LKSPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR 675
            ++ PIYNHVTGLLDPPELI+PPKILVIEGLHPM+D R
Sbjct:  143 VEKPIYNHVTGLLDPPELIQPPKILVIEGLHPMFDER 179          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.547e-41
Identity = 81/120 (67.50%), Postives = 92/120 (76.67%), Query Frame = 3
Query:  270 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPPRAHQAP 629
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP GGNPDSNTLISD TTVICLDDYH LDR GRK KGVTAL P A NFDLMY QVKA+K+G SV+KP        +  P   ++P
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESP 150          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 61/110 (55.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  282 QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPHLQSCHRSLGPP 611
            + ++IG+A DSGCGKSTF+RRLT +FG                  +  TVICLDDYHSLDR GRK  GVTALDPRANNFDLMYEQ+K +K G S+ KP        L PP
Sbjct:    7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPP 99          
BLAST of CN181674 vs. ExPASy Swiss-Prot
Match: KPPR_VITSX (Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 3
Query:  345 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVK 542
            LTSVFGGAAEPP+GGNPDSNTLISDTTTVICLDDYHSLDR      GVTALDPRAN+FDLMYEQVK
Sbjct:    1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDLMYEQVK 60          
The following BLAST results are available for this feature:
BLAST of CN181674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
KPPR_MESCR1.230e-5671.60Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL6.985e-5264.12Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_WHEAT3.833e-5062.21Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH3.587e-4876.19Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE5.547e-4167.50Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY35.041e-2655.45Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
KPPR_VITSX8.598e-2687.88Phosphoribulokinase, chloroplastic (Fragments) OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181674 ID=CN181674; Name=CN181674; organism=Citrus sinensis; type=EST; length=675bp
GCATTTTCATGTCTCATTTCAGAATTTAGCTGAAAGAATCCTAAAACGTT
CATTTCTGCTCTAGCAGCAGCATCCCTCACCGAGCCAAAAAAAAAAAAAG
AAAGAAAATGGCCATTTCCCTCAACTCACCATGCTCTCTTTACTCGCCAA
CAAAATCCCACTTGGGTTTTTTCAACAACCAAAGACAACTAGCGGTTTTT
TACAACAAGAGAAGCAGCAGCAGCAGCATCAGCAGCAAGCAGAGAGGATG
TCTTGTGATAACATGCTCAGCAGGTGACTCACAGACAATTGTGATTGGTC
TGGCGGCAGACTCGGGGTGTGGCAAGAGCACGTTCATGAGGAGACTAACA
AGCGTCTTTGGTGGAGCAGCAGAGCCACCAAAGGGCGGCAACCCTGACTC
AAACACTCTCATCAGCGACACCACCACTGTGATTTGCTTAGATGATTATC
ACTCGCTTGACAGAACTGGAAGAAAAGAAAAGGGTGTCACTGCACTTGAT
CCTAGAGCCAACAATTTTGATCTTATGTATGAACAGGTTAAGGCTATGAA
AGATGGAGTGTCTGTTGAAAAGCCCCATTTACAATCATGTCACCGGTCTC
TTGGACCCCCCCGAGCTCATCAAGCCCCCCAAGATCCTTGTCATTGAAGG
CTTGCACCCAATGTATGATGCTCGG
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