CN181661

Overview
NameCN181661
Unique NameCN181661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.483e-47
Identity = 93/109 (85.32%), Postives = 95/109 (87.16%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:  101 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.483e-47
Identity = 93/109 (85.32%), Postives = 95/109 (87.16%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DDDAF+
Sbjct:  101 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.102e-46
Identity = 92/109 (84.40%), Postives = 94/109 (86.24%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+QPLPD+DDDAFE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.102e-46
Identity = 91/109 (83.49%), Postives = 94/109 (86.24%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPD+DD+ F+
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.745e-46
Identity = 92/109 (84.40%), Postives = 93/109 (85.32%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              ASQPLPD+DDD FE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.987e-46
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPD+DD+AFE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.362e-45
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D              A+QPLPD+DDDAFE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.035e-45
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID              A+QPLPD+DD+AFE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.762e-45
Identity = 89/109 (81.65%), Postives = 92/109 (84.40%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID              A+QPLPD+DDD FE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CN181661 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.967e-44
Identity = 89/109 (81.65%), Postives = 92/109 (84.40%), Query Frame = -2 
Query:  279 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDEDDDAFE 605
            RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+  LPD+DD+AFE
Sbjct:  113 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CN181661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1B_LOTJA2.483e-4785.32GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA2.483e-4785.32GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA2.102e-4684.40GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC2.102e-4683.49GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH2.745e-4684.40GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC7.987e-4682.57GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.362e-4582.57GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC3.035e-4582.57GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH6.762e-4581.65GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC1.967e-4481.65GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181661 ID=CN181661; Name=CN181661; organism=Citrus sinensis; type=EST; length=606bp
ATTATCACACAATATATAAATGAACTAGGATATGGGGCATCATTTAAACA
TCCTACAGAAAATTGGATGGCTCCCCCGCTGGTAAACAGAGAATGTAGAC
GCGAAAACAAAAACAAGTAGAGACTGACATGAATTAGGCAAGAGTAAGAA
ACACAATGCTAAATAAGCCAGCAATGGTTCAATCCAAAGCTCATGTCAAA
AGACACCCAACAGATCCTCAAAACAATCAATATTGAACTCTTCACTCCAA
TAATCACACGATCCATTGTCTTCTTTCACTCGAAGGCGTCATCATCTTCA
TCTGGGAGAGGTTGACTAGCAGCAGCAGCAAGTTCAGCTTCATGTTGTTG
CTGAGCAGCCAAATCGATTTGCACCTCTGGGGGAGCAAGGGCAGGAGACT
CGACAAAATGCAAGTTAGGATCCCCAGCAAGTTTTCTGGCAAGGTAAAGA
AAAGGCTTCTCAAAGTTGTAATTGCTCTTGGCTGAGATCTCATAGTACTG
CAAATTCTTCTTCCTGTGGAAAGTAACCTGCTTTGCTTTCACCTGCCTGT
TCTTCACATCGACCTTGTTCCCGCAAAGAACAATTGGGATGTTTTCACAC
ACCCTG
back to top