CN188661

Overview
NameCN188661
Unique NameCN188661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 3.505e-86
Identity = 160/173 (92.49%), Postives = 169/173 (97.69%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVR
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 4.577e-86
Identity = 160/173 (92.49%), Postives = 168/173 (97.11%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSAVR
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.020e-85
Identity = 159/173 (91.91%), Postives = 169/173 (97.69%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVR
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 3.177e-79
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN188661 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 7.078e-79
Identity = 150/173 (86.71%), Postives = 158/173 (91.33%), Query Frame = 2 
Query:   83 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 601
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCA+AQAESLRYKLLGGLAVRRACYGVLRFIMESG++GCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
The following BLAST results are available for this feature:
BLAST of CN188661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS31_ARATH3.505e-8692.4940S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH4.577e-8692.4940S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS33_ARATH1.020e-8591.9140S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS3_RAT3.177e-7987.2840S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_PIG3.177e-7987.2840S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_MOUSE3.177e-7987.2840S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_HUMAN3.177e-7987.2840S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN3.177e-7987.2840S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS31_XENLA3.177e-7987.2840S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_AMBME7.078e-7986.7140S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188661 ID=CN188661; Name=CN188661; organism=Citrus sinensis; type=EST; length=603bp
TCGCAAACACCTATTAAGGCGGACTAGAGAGTGAGAGACTCCCAAAGCGC
CCTAACAGCAGCGGTGTTGGATTCTGAGAAACATGGCTACTCAGATTAGC
AAGAAGCGGAAATTTGTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGA
AGTTCTGACCCGAGAGCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTA
GGGTTACACCTGTGCGCACTGAGATCATCATTAGGGCCACTCGCACTCAG
AATGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGT
TCAGAAACGATTCAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGA
AAGTTAACAATAGGGGTCTCTGTGCCGTTGCTCAGGCTGAGTCTCTGCGT
TACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCT
GAGATTTATCATGGAGAGTGGTGCCCAGGGATGTGAGGTTATTGTGAGTG
GAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTAC
ATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCCGCTGTAAG
ACA
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