CN188660

Overview
NameCN188660
Unique NameCN188660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.192e-30
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVL  QGVLG+K
Sbjct:  127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLK 185

HSP 2 Score: 48.1358 bits (113), Expect = 5.192e-30
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = -2 
Query:  252 MLEWDQKGKQGPTTPLPDRVPI-PPLKEEVYVAP 350
            ML+WD KGKQGP TPLPD V I  P +++VY+AP
Sbjct:  189 MLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAP 222
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.541e-28
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIK 185

HSP 2 Score: 41.2022 bits (95), Expect = 3.541e-28
Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = -2 
Query:  237 MLEWDQKGKQGPTTPLPDRVPI-PPLKEEVYVAPGTATS 350
            ML+WD  GK GP TPLPD V I  P  + VY AP  A +
Sbjct:  189 MLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.002e-28
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSAVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIK 185

HSP 2 Score: 39.2762 bits (90), Expect = 6.002e-28
Identity = 20/34 (58.82%), Postives = 22/34 (64.71%), Query Frame = -2 
Query:  252 MLEWDQKGKQGPTTPLPDRVPI-PPLKEEVYVAP 350
            ML+WD KG  GP TPLPD V I  P +EE   AP
Sbjct:  189 MLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.650e-25
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 37.7354 bits (86), Expect = 9.650e-25
Identity = 17/29 (58.62%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   KEE+
Sbjct:  189 MLPWDPSGKIGPKKPLPDHVSIVEPKEEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.126e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.5798 bits (83), Expect = 2.126e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLAWDPSGKIGPKKPLPDHVSIVEPKDEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.127e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.5798 bits (83), Expect = 2.127e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.127e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.5798 bits (83), Expect = 2.127e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.128e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.5798 bits (83), Expect = 2.128e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.128e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.5798 bits (83), Expect = 2.128e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
[Close]
BLAST of CN188660 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.769e-24
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = -1 
Query:  361 MESGPKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLFSQGVLGIK 537
            MESG KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVL  QGVLGIK
Sbjct:  127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 185

HSP 2 Score: 36.1946 bits (82), Expect = 2.769e-24
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = -2 
Query:  264 MLEWDQKGKQGPTTPLPDRVPIPPLKEEV 350
            ML WD  GK GP  PLPD V I   K+E+
Sbjct:  189 MLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217
The following BLAST results are available for this feature:
BLAST of CN188660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS33_ARATH5.192e-3084.7540S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH3.541e-2886.4440S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH6.002e-2888.1440S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_ICTPU9.650e-2579.6640S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_AMBME2.126e-2479.6640S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS32_XENLA2.127e-2479.6640S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS31_XENLA2.127e-2479.6640S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_RAT2.128e-2479.6640S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE2.128e-2479.6640S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_PONAB2.769e-2479.6640S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188660 ID=CN188660; Name=CN188660; organism=Citrus sinensis; type=EST; length=537bp
AGCTTACGCATAAGATTTTAGCCCCTCTTAGGTCAAGTAAACGAACAAAA
CTGAAACCAAATATTCTAATAACCAAAATTGTAGACAAGACAACATCCTG
CACAGTACCCAGTAATATTCTCTTGCTCCTCCATAGGGGGAGTAAAAGAT
AAAAGAAAACATAAAGCTATTACTAAATCATTACATCAGACATTGGACAC
AACTCAACTCAGGGGTTATGCTACTGGAAGCTCAATACTGGTTGCCGTCC
CTGGTGCAACATACACTTCTTCCTTCAGAGGGGGGATGGGAACCCGATCA
GGCAAAGGTGTTGTTGGTCCTTGCTTGCCCTTTTGATCCCATTCAAGCAT
GGGGGGGCGCCTTGATACCAAGCACACCCTGGCTAAAAAGAACATGTCTT
ACAGCTGAGTCGATGTATTCATTCACAGGTTGACCTGAGGATATCATGTA
CCCATCTTTAAATTTCATGGACTTTGCACGTTGAGCCCGGAGCTTTCCAC
TCACAATAACCTCACATCCCTTGGGACCACTCTCCAT
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