CN181652

Overview
NameCN181652
Unique NameCN181652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: MYG1_MOUSE (UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 74/162 (45.68%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  151 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            R+GTHNG+FHCDEAL C ++RL  ++ NA+IVR+RDP+              Y+P +  YDHHQ+ F E       G  + TKLSSAGLVY HFG++L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W
Sbjct:   45 RIGTHNGTFHCDEALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTW 205          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: MYG1_BOVIN (UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.950e-35
Identity = 74/162 (45.68%), Postives = 102/162 (62.96%), Query Frame = 1
Query:  151 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            R+GTHNG+FHCDEAL C ++RL  ++  A+IVR+RDP+              YDP    YDHHQ+ F E       G  + TKLSSAGL+Y HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q++ +  PRY+  T LS+RV +LN  W
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWE-EGEPRYLLTTTLSARVARLNPTW 206          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: MYG1_RAT (UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 74/162 (45.68%), Postives = 101/162 (62.35%), Query Frame = 1
Query:  151 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            R+GTHNG+FHCDEAL C ++RL  ++ NA+IVR+RDP+              Y+P    YDHHQ+ F E       G  + TKLSSAGLVY HFG +L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRNAEIVRTRDPEKLALCDIVVDVGGEYNPQRHRYDHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTW 206          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: MYG1_HUMAN (UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 74/162 (45.68%), Postives = 101/162 (62.35%), Query Frame = 1
Query:  151 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            R+GTHNG+FHCDEAL C ++RL  ++ +A+IVR+RDP+              YDP    YDHHQ+ F E       G  + TKLSSAGL+Y HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGPSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPTW 206          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: YK4P_CAEEL (UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.826e-30
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  154 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVFGH----GFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            +GTH+G FHCDEA  CFM++   +F +  I+R+RD                +D S   YDHHQ+GF +         F TKLSSAGLVY H+G+E+I + L  +     +   +  +Y+ F+E+IDAIDNGI+QY  D  PRY ++ NLSSR G+ N  W
Sbjct:    5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYDHHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVINQILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQY--DGVPRYHSSGNLSSRTGQFNSHW 162          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: U160_DICDI (UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.525e-29
Identity = 58/154 (37.66%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  160 THNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            TH+GSFH DEAL C++++L   + +++I+RSRD                Y+     +DHHQ GF E F      KLSSAGL+YKH+GK++I + L+ ++   ++  L+  +Y + ++ +D +DNG+ +Y +D  PRY + +++S+RVG LN  W
Sbjct:    8 THSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGW 159          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: YEY6_YEAST (UPF0160 protein YER156C OS=Saccharomyces cerevisiae GN=YER156C PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 65/163 (39.88%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  148 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDW 621
            K++ TH+GSFH DE+L  +M+RL  +F +A++VRSR+PK              YD     +DHHQ+GF E F   + TKLSSAGL++KH+G+++I   LN      D+  L+  VYK F+EA+DA DNGI++Y    D++  P + +N  ++   +  +N +W
Sbjct:   15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVK-FFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNW 176          
BLAST of CN181652 vs. ExPASy Swiss-Prot
Match: YIW4_SCHPO (UPF0160 protein C694.04c OS=Schizosaccharomyces pombe GN=SPAC694.04c PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27
Identity = 65/162 (40.12%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  145 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELI---AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDW 621
            L ++ TH+G+FH DEAL  +M+R  D+F  AQIVRSRDP+              YD     +DHHQ+ F + F   +ST+LSSAGL+YKHFG+E+I     +L ++E   D+  L+  VY++F+E +DA DNGI+ Y     P +    +L   V      W
Sbjct:    4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKYFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINE--QDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAW 162          
The following BLAST results are available for this feature:
BLAST of CN181652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MYG1_MOUSE1.773e-3545.68UPF0160 protein MYG1, mitochondrial OS=Mus musculu... [more]
MYG1_BOVIN3.950e-3545.68UPF0160 protein MYG1, mitochondrial OS=Bos taurus ... [more]
MYG1_RAT8.801e-3545.68UPF0160 protein MYG1, mitochondrial OS=Rattus norv... [more]
MYG1_HUMAN1.149e-3445.68UPF0160 protein MYG1, mitochondrial OS=Homo sapien... [more]
YK4P_CAEEL3.826e-3042.50UPF0160 protein C27H6.8 OS=Caenorhabditis elegans ... [more]
U160_DICDI5.525e-2937.66UPF0160 protein OS=Dictyostelium discoideum GN=DDB... [more]
YEY6_YEAST4.677e-2839.88UPF0160 protein YER156C OS=Saccharomyces cerevisia... [more]
YIW4_SCHPO6.754e-2740.12UPF0160 protein C694.04c OS=Schizosaccharomyces po... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181652 ID=CN181652; Name=CN181652; organism=Citrus sinensis; type=EST; length=624bp
GAGGGCGCAACCAAAGGGTTTAACCAGAAACTCTTCTTCTTCAGCGTGCA
CAAAAACCTCTTCACTCGCCCTATCATAGCCATGGCAGGCACCGGTGTTT
CTTCTTCTCCTGCTTACTCCACTTCATCCCCCAGCCAAGCCCCTCTCAAG
CGCGTGGGCACCCACAACGGCAGCTTCCACTGCGACGAGGCCCTTGGTTG
CTTCATGATTCGCCTCACTGACAAGTTCTTCAACGCCCAGATAGTCCGCT
CCCGCGACCCCAAGGTGTTGGATGATCTTGATGCGGTGCTTGATGTTGGA
GGTGTGTATGATCCCAGTAATGATTGTTATGATCATCACCAGAAGGGTTT
TGAAGAGGTTTTTGGACACGGGTTCTCTACGAAACTTAGTAGTGCTGGTC
TTGTTTACAAGCATTTTGGAAAGGAGTTAATAGCTAAGGAACTTAATGTT
GATGAAGGGCATCCAGACGTGCATCGACTATTTTTGGCTGTTTATAAGAA
CTTCATGGAGGCAATCGATGCTATTGATAACGGAATCAATCAGTATGACA
CAGACAAACCTCCAAGATATGTGAATAATACAAATTTGTCTTCTAGGGTG
GGGAAACTAAATTTGGATTGGACG
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