CN181640

Overview
NameCN181640
Unique NameCN181640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6950 contig Csv1_Contig6950:149..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 79/204 (38.73%), Postives = 109/204 (53.43%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETEL 673
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A +++   KF         +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDE---KFEPQ----KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 77/204 (37.75%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETEL 673
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A ++++             +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEP-------QKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 77/204 (37.75%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYK---SKGIRINVLCPEFVETEL 673
            G  A VTG A GIGRA +  L  KG  V +VD + E G +  A +++E             +FI+CDV +       F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + GVIINM S AGL P    P+Y ASK G++ FTRS    +   + G+R+N +CP FV T +
Sbjct:    5 GKVALVTGAAQGIGRAFAEGLLHKGAKVALVDWNLEAGVKCKAALDEEFEP-------QKTLFIQCDVADQEQLRDTFTKVVDYFGRLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 74/204 (36.27%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETEL 673
            G  A VTG A GIG+A + AL   G  V +VD + E G +  A ++++             +F++CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +
Sbjct:    5 GKVALVTGAAQGIGKAFAEALLLHGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFVQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 76/204 (37.25%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETEL 673
            G  A VTG A GIGRA + AL  KG  V +VD + E G +  A ++++             +FI+CDV +       F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+ INM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV+T +
Sbjct:    5 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVKCKAALDEQFEP-------QKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 74/204 (36.27%), Postives = 108/204 (52.94%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETEL 673
            G  A VTG A GIG+A + AL   G  V +VD + E G +  A ++++             +FI+CDV + +     F K V  +G LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IIN+ S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +
Sbjct:    5 GKVALVTGAAQGIGKAFTEALLLHGAKVALVDWNLETGVKCKAALDEQFEP-------QKTLFIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPI 190          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 77/203 (37.93%), Postives = 107/203 (52.71%), Query Frame = 2
Query:   83 SAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENA-KFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKA 685
            +  +TGGASGIG A   A  G+   V V D+ E +G+   A+V KEN  + H         F++ D+T+      A E  V T+GGLD+ IN+AGI    P HE +      W   L VNL  +   ++ A+  M AA K G IIN  S  GL  +   P Y+ASKGGV+  T+S+   Y    IR+N +CP  ++T L  K+
Sbjct:    7 TVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGE---AMVRKENNDRLH---------FVQTDITDEAACQHAVESAVHTFGGLDVLINNAGIEIVAPIHEMELS---DWNKVLQVNLTGMFLMSKHALKHMLAAGK-GNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKS 193          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 71/203 (34.98%), Postives = 104/203 (51.23%), Query Frame = 2
Query:   83 SAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENA-KFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKA 685
            +  +TGGASGIG A   A   +   V V D+ E +G+   A++ KEN  + H         F+  D+T+      A    V  +GGLD+ IN+AGI    P HE +     +W   L+VNL  +   ++ A+  M  + K G IIN  S  G+  +   P Y+ASKGGV+  TRS+   Y    IR+N +CP  ++T L  K+
Sbjct:    7 TVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGE---AMIRKENNDRLH---------FVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGIEIVAPIHEMELS---NWNKVLNVNLTGMFLMSKHALKYMLKSGK-GNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKS 193          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 65/196 (33.16%), Postives = 99/196 (50.51%), Query Frame = 2
Query:   92 VTGGASGIGRALSLALAGKGVFVTVVDLS-EEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 673
            VTGG+ G+GRA+++    +   V V   S EE+  EV   +E+   +         A+ +R DVT   D     E  V  +G LD+ IN+AG+ NP+P HE   +   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+ L T +L   Y  KGIR+N + P  ++T +
Sbjct:   12 VTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQ---------AIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSLE---NWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPI 195          
BLAST of CN181640 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 66/199 (33.17%), Postives = 101/199 (50.75%), Query Frame = 2
Query:   77 GLSAFVTGGASGIGRALSLALAGKGVFVTVVDLSEEKGKEVAALVEKENAKFHSNLGFPSAMFIRCDVTNTRDTAAAFEKHVATYGGLDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETE 670
            G    +TG  SGIG+  ++  A +G  V + D+SEEKGKE   L++    +         A FI  DV   +D     +K V T+G LDI +N+AGI   +P+   +      +  T+ VN+      ++ A+  M+  +  GVI+N+ S AGL       +YS SK  ++  TRSL   Y   GIR+N +CP   ++E
Sbjct:    5 GKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGE---------AAFIFGDV--AKDAEQIVKKTVETFGRLDILVNNAGI---VPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMK-KQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSE 188          
The following BLAST results are available for this feature:
BLAST of CN181640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PGDH_MACFA2.949e-2738.7315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN6.571e-2737.7515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
PGDH_CAVPO6.571e-2737.7515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_MOUSE3.261e-2636.2715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_BOVIN4.259e-2637.2515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_RAT9.488e-2636.2715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
BACC_BACSU6.799e-2437.93Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU1.852e-2134.98Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
DHG2_BACME2.264e-1933.16Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
Y325_THEMA6.586e-1933.17Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001E05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181640 ID=CN181640; Name=CN181640; organism=Citrus sinensis; type=EST; length=714bp
GAGGAAAACTCTTAACCGAGTAGTTTAATCGCTTCCCTTTGCCTCTCTGT
TTGTTCATAAAATGGAGCTCAAACCGGGCTTATCAGCTTTTGTCACCGGC
GGTGCATCTGGGATTGGTAGAGCTTTGAGCCTAGCTCTTGCAGGGAAGGG
AGTCTTTGTGACAGTTGTTGATCTCTCTGAAGAAAAGGGAAAGGAAGTTG
CAGCGCTTGTTGAAAAAGAGAATGCCAAGTTTCATTCAAACTTAGGATTT
CCATCTGCTATGTTTATAAGATGTGATGTGACCAACACAAGGGATACAGC
TGCTGCTTTTGAGAAGCACGTAGCTACATATGGAGGATTGGATATATGTA
TCAACAGTGCTGGCATAAGTAATCCCATTCCATTCCACGAGGATCAAACT
GATGGCACACGTTCATGGAGATTCACTCTTGATGTGAACTTGGTTGCAGT
TATTGATTGCACTCAGAAAGCGATTGGAATTATGCAAGCTGCAAAAAAGC
CTGGAGTGATTATAAATATGGGATCTTCTGCAGGACTTTATCCATTTTAC
ACAGATCCAATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAG
ATCACTTACTCCCTACAAAAGCAAGGGAATTCGCATCAACGTGCTTTGCC
CTGAGTTTGTTGAAACTGAGTTGGCCTTAAAGGCGGGCTCCCCAATAATT
GATCTGATGGGGGG
back to top