CN181632

Overview
NameCN181632
Unique NameCN181632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1170..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 6.495e-68
Identity = 123/170 (72.35%), Postives = 141/170 (82.94%), Query Frame = -2
Query:  243 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 752
            IDDRPSCFR+PRGNGIG  LPP NKG P+EIGKGRIL EG+RVA+LGYGS VQ C+ AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  547 IDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.224e-67
Identity = 118/172 (68.60%), Postives = 145/172 (84.30%), Query Frame = -2
Query:  237 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 752
            IDDRPSCFR+PRGNGIG  LPPN KG PLE+GKGR+L+EG+RVA+LGYGS VQ C+ AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  543 IDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.729e-66
Identity = 118/170 (69.41%), Postives = 143/170 (84.12%), Query Frame = -2
Query:  243 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 752
            IDDRPSCFR+PRGNGIG  LP  NKG PLE+GKGRIL+EG+RVA+LGYGS VQ C+ AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  546 IDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 91/165 (55.15%), Postives = 118/165 (71.52%), Query Frame = -2
Query:  258 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 752
            IDDRPS  R+PRG G+G V+P   K  PLEIGKGR++ EG  +AIL YG+ +Q+ + AA ML +Q +S TVADARF KPLD +LI +LA EHE+L+T+EEGS GGFGS V   L   G LD  LK+R M LPD + DH +PA   +++GL++RHI+A  +  LGR
Sbjct:  466 IDDRPSAVRYPRGEGVGVVIPDLLK--PLEIGKGRVVREGTSIAILSYGTRLQEALKAAEMLAAQGLSATVADARFAKPLDNELIERLAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 90/163 (55.21%), Postives = 118/163 (72.39%), Query Frame = -2
Query:  261 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 749
            D  P   R+PRG G+G  +P   +G  LEIGKGRI+ EG +VAIL  G+ +++ +LAA  L ++ +S TVADARF KP+D  LIR+LA +HE+LITVEEGS+GGFGS+V HFL  SG+LD  LK+R MVLPD + D  +PA Q +E+GL++RHI  T L  LG
Sbjct:  470 DHGPIAVRYPRGEGVGLEMP--ERGQVLEIGKGRIVKEGTKVAILSLGTRLKEALLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.116e-43
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = -2
Query:  243 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 752
            IDDRPS FR+PRG G+G  L  + +G+ + IGKGR++ EG+RVAIL  G+ + + + AA+ L ++ ++ TV DARF KPLD +LI +LA EHE+LITVEEGSVGGFGSHV H L   G LD  LK+R + LPD +++H +PA Q E+ GL++  I ATVL+ LG  +  +
Sbjct:  475 IDDRPSAFRYPRGEGVGIEL--SERGSVMPIGKGRVVREGNRVAILSLGTRLAEALKAADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.116e-43
Identity = 91/164 (55.49%), Postives = 116/164 (70.73%), Query Frame = -2
Query:  261 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 752
            IDDRPS FRFPRG G+G  +P  ++GT LEIGKGR++ EG+RVAIL +G+ +++   AA  L  + I+ T+ADARF KPLD  LI QLA  HE LITVEEG+VGGFGSHV H L  + + D  +K RSMVLPD +ID  SP D    +G+++  I A VL+ LG
Sbjct:  470 IDDRPSAFRFPRGEGMGVDMP--DRGTALEIGKGRMISEGNRVAILNFGTRLKEVQEAAETLSQRGITPTIADARFAKPLDEALILQLARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKDMYAVAGMNAEDIVAKVLTTLG 631          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.903e-43
Identity = 90/169 (53.25%), Postives = 118/169 (69.82%), Query Frame = -2
Query:  246 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 752
            IDD PS FR+PRGNG G  +P   +  PLEIGKGRI+ EG R+AIL  G+ +++ + AA+ L +Q  S TVADARF KPLD DLI +LA EHE+LITVEEG+VGGFG+ V H L   G LD  L++R++ LPD + D  +P D  E +GL++RHI+A  L  +G+   A
Sbjct:  466 IDDGPSAFRYPRGNGTGIEIPDQIE--PLEIGKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGKDDAA 632          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.485e-43
Identity = 88/169 (52.07%), Postives = 119/169 (70.41%), Query Frame = -2
Query:  246 IDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 752
            I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGSHV   L+  G LDG +K+R+MVLPD ++DH +PA     +GL ++ I   V   LG+   A
Sbjct:  466 INDRPSAVRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
BLAST of CN181632 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.485e-43
Identity = 89/164 (54.27%), Postives = 115/164 (70.12%), Query Frame = -2
Query:  258 DDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 749
            D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  468 DEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
The following BLAST results are available for this feature:
BLAST of CN181632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 448
Match NameE-valueIdentityDescription
DXS_ARATH6.495e-6872.35Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ3.224e-6768.60Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN2.729e-6669.41Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_HYPNA4.529e-4555.151-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_RHOCS8.542e-4455.211-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_MAGSA1.116e-4352.351-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS1_JANSC1.116e-4355.491-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_MARMM1.903e-4353.251-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_RHOP22.485e-4352.071-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRUSU2.485e-4354.271-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181632 ID=CN181632; Name=CN181632; organism=Citrus sinensis; type=EST; length=753bp
TTATCTACGTGAAGATAATGCCTTGTATCTTTATTACAAGAAAAAATTGT
GAATGTACAGAAACAACAAAAGGCTTGACCATTACATTTATAATCCCACG
GTAATGCTTCATGGTTACAGGGGATATGAAGGTAAAGATTCTAAGAGTTG
GACCTTATAGTGTATAACACCCCCAACTTGGAATTGTAAGTTGGATCCGA
AGGGCAAGATGTTGTTTGATTTTGTATGATTACTTAAATCAGAAGGGCTT
CTTTTGGCCTCCCTAAGAGAGATAAGACTGTTGCAGAGATATGCCTTGAG
GAGAGCCCTGATTCTTCAAGCTGATCGGCTGGTGATCCATGGTCAATGTA
TCTATCAGGAAGCACCATTGATCTCAACTTGAGAGGTCCATCCAGAATGC
CACTTAAGGTTAGAAAGTGACATACATGAGAGCCAAAGCCTCCCACAGAA
CCCTCTTCCACAGTAATTAGGATTTCATGCTCATTGGCCAACTGTCTAAT
GAGGTCTGTATCCAAAGGTTTGCAAAATCTTGCATCAGCCACTGTCACGG
AAATGTCTTGGCTCTTAAGCATGTTCGCAGCTAGCACACATTGTTGGACT
ACAGAACCATAGCCCAAAATTGCCACTCTATCGCCTTCCATTAGGATTCT
TCCCTTCCCAATCTCAAGTGGAGTTCCTTTGTTATTAGGTGGGAGAACTG
CTCCAATTCCGTTGCCCCTTGGAAATCTGAAACAGCTGGGCCTGTCATCT
ATA
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