CN181629

Overview
NameCN181629
Unique NameCN181629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3585 contig Csv1_Contig3585:110..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 76/196 (38.78%), Postives = 108/196 (55.10%), Query Frame = -2
Query:  173 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES*LQF*SVHVCSEETSFSNKKLLS 754
            S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI+FSS    ++AL ++N  +  GR +  R  V   ++ +    V   S E    N +LLS
Sbjct:  128 SQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL--RLNVAGQKAPVSSPPVVETSPENDSDNSELLS 320          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 62/172 (36.05%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  248 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 760
            D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI V    DR+
Sbjct:  148 DSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = -2
Query:  251 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 760
            D   L ++F+  G V   EV  N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF++ SS+AE   A+ +L+G    GRTI V    +R
Sbjct:  109 DSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT---------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = -2
Query:  251 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 760
            D  +L  +F   G V   EV  N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R       P  ++         YVGNL W V    L   F   G VVSARV+ DR+   +R FGF++ SS++E  DA  +L+G    GR + V    +R
Sbjct:   67 DSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRV---------YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = -2
Query:  251 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 748
            L  +F+  GTV   EV  N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR   A           VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF++ S   E + A+S L+G +  GR I V    +R
Sbjct:  166 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR---------VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = -2
Query:  269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM----NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 760
            D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:   99 DSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = -2
Query:  269 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 760
            D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  ++    S     F  +S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:   99 DSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 61/184 (33.15%), Postives = 92/184 (50.00%), Query Frame = -2
Query:  251 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 760
            D ++L ++F+  G V  VEV  +  TG SRG G++TM S++  + A    +G ++ GR +RV        R    +     P+  F                S +++YVGNLSW V    L + F   G VV ARV++DR    ++ FGF+++ S  E ++A  SL+G D  GR I V E   R
Sbjct:  103 DSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 61/188 (32.45%), Postives = 90/188 (47.87%), Query Frame = -2
Query:  251 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 760
            D + L  +F+  G V  VEV  +  TG SRG G++TM +    + A    +G ++ GR +RV        R                  R+  +     +     +S +++YVGNLSW V    L+  F   G VV A+V++DR    +R FGF+++SS  E  DA  SLNG D  GR+I V    +R
Sbjct:   99 DSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of CN181629 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = -2
Query:  263 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 751
            EL  + +  G +   EV  +  +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+SFSS+ E +AA+ +LN +   G+ I V +
Sbjct:   99 ELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259          
The following BLAST results are available for this feature:
BLAST of CN181629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ROC5_NICSY5.883e-2438.7833 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY7.952e-2136.0531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY9.720e-1934.5028 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.658e-1835.0928 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_ARATH2.828e-1836.5331 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICPL6.300e-1835.5030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY1.404e-1736.3629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_ARATH5.334e-1733.15Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICSY5.897e-1632.4529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
RRP2_SPIOL2.097e-1332.7430S ribosomal protein 2, chloroplastic OS=Spinacia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181629 ID=CN181629; Name=CN181629; organism=Citrus sinensis; type=EST; length=761bp
CCAACTANTAACAAAATCAACCACTACCTGCAACACCTGCACCTCAGTAT
TTTTAACATAATGTTTACATATGAAAAAGCCTCAGGGACTTCCCAGACAC
AAGATCTTGAATTCTGGTGGGCATTCGTACCCGCTATCCTGCACCACCTT
TCAGCCAAGGAGGATACTCCAAGCTAAGCAATTTCTTGTTACTAAAAGAA
GTTTCTTCACTACAAACATGAACCGATCAAAACTGCAATCAAGACTCAGT
TCTGTCAACACCTTCTCTAACAATTATTGTCCGACCCCGAAAGTCTGTTC
CATTTAAAGAAAGTGCAGCATCACGTTCTGCGTCAGAAGAGAAGGAAATA
AACCCAAAAACTCGGGTGGTTTGTCCTTTACGATCGTGCAACACTCTAGC
ACTGACCACAGTCCCAAACCGGCCAAAATGATTTCTCAAATCCTCAGGTT
TTACAGCCCAGGAAAGATTGCCAACATATAATTTATGAGGGCTTTCATAG
ACAAAAATCTTCTTTGGTGGTGAAATCAATGCCTCAGCATTCCTAGTCCG
CGAATTCATATCAATTGAAAATCTCACCCGCATTTCACGTCCACCCACAT
CAGATCCGTCCAATGCAATAATTGCATTTTTTGCTGAATTGATCGAACCC
ATTGTCAGGTAACCGCATCCACGACTTATGCCTGTTTCGGGATTCCTCGA
AACCTCAACGGAAAGAACGGTTCCAAAAGGCTTGAACATCTCAAGAAGCT
CTGAAATGTCA
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