CN181616

Overview
NameCN181616
Unique NameCN181616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 8.929e-104
Identity = 188/214 (87.85%), Postives = 207/214 (96.73%), Query Frame = 3
Query:   93 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGMDKMLQ PDGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L+RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+ EPLVQTCMTTL+SK+VNRCKR LAEIAVKAVLAVADLER+DVNLDLIKVEGK  GK
Sbjct:    1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGK 214          

HSP 2 Score: 23.483 bits (49), Expect = 8.929e-104
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  722 K*GEGLEDTELIYG 763
            K G  LEDTELIYG
Sbjct:  210 KVGGKLEDTELIYG 223          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.974e-100
Identity = 186/214 (86.92%), Postives = 203/214 (94.86%), Query Frame = 3
Query:   93 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            MAL FDE+ RPFI+LR+QE+KSRL+GLDAQKAN++AGK+VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKLMVELSRSQDY+IGDGTTGVVVMAGSLLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+RCKR LAEIAVKAVLAVADLERKDVNLDLIKVEGK  GK
Sbjct:    1 MALDFDEYWRPFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGK 214          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 8.652e-100
Identity = 183/214 (85.51%), Postives = 203/214 (94.86%), Query Frame = 3
Query:   93 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            MALAFDE+GRPFI+LR+QE+KSRL+GLDA KAN++A KA+ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKL+VELSRSQDY+IGDGTTGVVVMAG+LLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+RCKR LAEI+VKAVLAVADLERKDVNLDLIKVEGK  GK
Sbjct:    1 MALAFDEYGRPFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAVADLERKDVNLDLIKVEGKVGGK 214          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.216e-77
Identity = 141/212 (66.51%), Postives = 180/212 (84.91%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVTITNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+ K    +N+ EPL+QT  TTL SK++N C R++AEIAV AVL VAD+ER+DV+ +LIKVEGK  G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGR 218          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.074e-77
Identity = 140/212 (66.04%), Postives = 178/212 (83.96%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+DV+ +LIKVEGK  G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGR 218          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.074e-77
Identity = 140/212 (66.04%), Postives = 178/212 (83.96%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+DV+ +LIKVEGK  G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGR 218          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.074e-77
Identity = 140/212 (66.04%), Postives = 178/212 (83.96%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+DV+ +LIKVEGK  G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGR 218          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.620e-77
Identity = 140/212 (66.04%), Postives = 179/212 (84.43%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+      +N+ EPL+QT  TTL SK+VN C R++AEIAV AVL VAD+ER+DV+ +LIKVEGK  G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGR 218          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.108e-76
Identity = 138/214 (64.49%), Postives = 179/214 (83.64%), Query Frame = 3
Query:   93 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            M+L FDE+G PFI++R Q+ K RLRG++A ++++ A K ++ I+++SLGPKGMDKM+ S DG+V +TNDGATILE M VDNQIAKLMV+LS+SQD EIGDGTTGVVV+AGSLLEQAE+L+E+GIHP RI EGYE A +IA EHL+ I+   EF  +++EPL++T MT L SK+VNR  R+++EIAVKAV++VADLERKDVNL+ IK+EGK  GK
Sbjct:    1 MSLVFDEYGNPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFSKDNIEPLIKTAMTCLGSKIVNRFHRQMSEIAVKAVISVADLERKDVNLENIKLEGKEGGK 214          
BLAST of CN181616 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.330e-70
Identity = 131/212 (61.79%), Postives = 177/212 (83.49%), Query Frame = 3
Query:   99 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKSRGK 734
            L FDE G+PFI++R+QE + R+ G++A K+++ A +AVA  LRTSLGP+G+DKML SPDGDVTITNDGATI+E+MDV + +AKLMVELS+SQD+EIGDGTTGVVV+AG+LLE+AEKL++RGIHPI+IA+G+++A + A+E L+ I+ KF   + + E LV+T  T+L SK+VNR  R+ AEIAV AVL+VAD+E KDVN ++IK+EGK  G+
Sbjct:    8 LLFDESGQPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFP--VENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSVADIESKDVNFEMIKMEGKVGGR 217          
The following BLAST results are available for this feature:
BLAST of CN181616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 496
Match NameE-valueIdentityDescription
TCPE_ARATH8.929e-10487.85T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA2.974e-10086.92T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA8.652e-10085.51T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MOUSE1.216e-7766.51T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_PONAB2.074e-7766.04T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA2.074e-7766.04T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN2.074e-7766.04T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_RAT4.620e-7766.04T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_DICDI5.108e-7664.49T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_CAEEL9.330e-7061.79T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181616 ID=CN181616; Name=CN181616; organism=Citrus sinensis; type=EST; length=764bp
TAGGCAAAGCACTGAAGTTCTACACTCTTCTTGTGAAGAGAAGTGGAAGG
GGAAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAATGGCGTT
AGCGTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAGCAAGAAG
AGAAGTCCAGATTGCGTGGACTCGATGCTCAGAAAGCCAACGTTTCGGCC
GGCAAAGCGGTGGCTCGGATCCTCCGGACCTCCCTCGGACCCAAAGGCAT
GGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACAAATGATG
GTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGCAAAGCTG
ATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATGGTACAAC
TGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAGAAGCTTT
TGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGAAATGGCT
TCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGTTTGAGTT
CGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACTACTTTAA
ATTCGAAAATGGTGAATCGTTGCAAACGCAGATTGGCTGAGATTGCTGTC
AAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCAATTTAGA
TTTGATTAAAGTTGAGGGAAAAAGTAGGGGGAAGGGTTGGAGGACACTGA
ACTAATATATGGAA
back to top