CN181615

Overview
NameCN181615
Unique NameCN181615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6197 contig Csv1_Contig6197:38..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.156e-50
Identity = 95/154 (61.69%), Postives = 115/154 (74.68%), Query Frame = 3
Query:  105 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSL 566
            CRMYE R+PEVD  V++ V+ I +MGAYV LLEY+NIEGM+L SE             +VGR E V+VLRVDKEKGYIDLSKRRVS ED+  CEER+NKSK VHSIMRH+AE   + LE +Y  IGWPLYRKYGHA++AFK+ +++PD V   L
Sbjct:    6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGL 159          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_YEAST (Eukaryotic translation initiation factor 2 subunit alpha OS=Saccharomyces cerevisiae GN=SUI2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.257e-45
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 3
Query:  105 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTD 542
            CR YE +YPE+D  VM+ V+ IA+MGAYV LLEY+NIEGMIL SE             +VG+ +  +VLRVDKEKGYIDLSKRRVS EDI  CEE+Y KSK VHSI+R+ AE   I LEELY  I WPL RK+GHA+EAFK+ + D
Sbjct:    6 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID 151          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.513e-42
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = 3
Query:  102 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG-----IDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLN 560
            +CRMYE +YPE +  VM+++++I DMG YVSLLEYNNIEGMIL SE             +VG+ E V+V+RVDK+KGYIDLSKRRV+ E+   CEER++KSK VH I+R+VA  L      +  + LY    WPLY KYGHA+EAFK+ +T+P SV N
Sbjct:    6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVRVGKTEAVVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDNVVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFN 162          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.772e-39
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPL---YRKYGH-AFEAFKIIVTDPDSVLNSL 566
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE LY    W     Y+K G+ A++AFK  V+DPD VL+ L
Sbjct:    2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGL 166          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_DROME (Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.015e-38
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 3
Query:   99 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID----LEELYVNIGWPLYRKYGH---AFEAFKIIVTDPDSVLN--SLTREVKEI 587
            L  R Y  RYPE++  VM+ V +IA+MGAYV LLEYNNIEGMIL SE             +VG+ EPV+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +    LE+LY    W   +KY +   A++ FK  VTDP +V +  +L  E KE+
Sbjct:    3 LTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLEPETKEV 173          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.261e-38
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 608
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNERVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.953e-38
Identity = 84/160 (52.50%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPL---YRKYGH-AFEAFKIIVTDPD 548
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       L+ L+    W     Y+K G+ A++AFK  V+DPD
Sbjct:    2 PGLNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLDYTKDEQLDSLFQRTAWVFDEKYKKPGYGAYDAFKNAVSDPD 161          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.953e-38
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 608
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.953e-38
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 608
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          
BLAST of CN181615 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.953e-38
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 3
Query:   93 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 608
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          
The following BLAST results are available for this feature:
BLAST of CN181615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF2A_SCHPO1.156e-5061.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_YEAST7.257e-4560.96Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DICDI1.513e-4254.43Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR7.772e-3953.61Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DROME1.015e-3850.58Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB2.261e-3850.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENLA2.953e-3852.50Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT2.953e-3850.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE2.953e-3850.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN2.953e-3850.00Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181615 ID=CN181615; Name=CN181615; organism=Citrus sinensis; type=EST; length=630bp
GCCTAATTCTTGTTCCCACTCCCTTCGAATTTTCCCGAGAAAACGCAAAA
GCTAAAAAGCTTTCCGAGCAACCAATCATGGCAAGCCACTCGCCCAACCT
GGAGTGCCGGATGTACGAGGCGAGGTACCCGGAAGTCGACATGGCCGTGA
TGATCCAAGTGAAGAACATCGCCGACATGGGCGCCTACGTGTCGCTGCTC
GAGTACAACAACATCGAAGGGATGATCCTTTTCTCGGAGCTCTCGCGACG
TCGTATTCGTAGTGTCAGTAGCCTCATTAAAGTCGGCCGCATCGAGCCCG
TCATGGTCCTGCGTGTCGACAAGGAAAAAGGTTACATTGATTTGAGTAAA
AGAAGAGTTAGTGAAGAGGATATTCAAGCCTGTGAGGAGAGGTACAACAA
GAGCAAGCTCGTTCACTCTATCATGCGACACGTGGCTGAGACTTTGGGCA
TCGATTTAGAGGAACTGTATGTCAATATTGGCTGGCCCTTGTACCGGAAA
TATGGTCATGCTTTTGAGGCATTCAAAATCATTGTTACTGATCCTGATTC
TGTTTTGAATTCCCTCACTCGTGAAGTCAAAGAAATTGGCCCTGATGGAC
AGGAGGTAACTAAGGTGGTTCCTGCTGTGA
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