CN181610

Overview
NameCN181610
Unique NameCN181610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.929e-25
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  144 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGT 368
            KKGDIM+FPQGLLHFQVN G   AL F SF+SP+PGLQI DFALF N+L  +L+ QTTFLD A +K+LKG+LGGT
Sbjct:  134 KKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.661e-24
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = -1
Query:  141 GDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGTG 362
            GDIM+FPQGLLH+Q N+G   A+  V+F+ PNPGLQITD+ALFANNL   +VE+ TFLDDA VK+LK +LGG+G
Sbjct:  140 GDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSAIVEKVTFLDDAQVKKLKSVLGGSG 213          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.707e-23
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = -1
Query:  141 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGTG 368
            K G +M+FPQGLLHFQ+N+G   A   V+FNS NPGLQI DFALFAN+L  +LV  TTFLD  TVK+LKG+LGGTG
Sbjct:  133 KPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATTVKKLKGVLGGTG 208          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.965e-23
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = -1
Query:  144 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGT 368
            +KGDIM+FPQGLLHFQVN G   AL F SF S +PGLQI DFALF N+L  +++ QTTFLD A +K+LKG+LGGT
Sbjct:  139 EKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.965e-23
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  144 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGT 368
            KKGDI++FPQGLLHFQVN G   A+ F SF+SP+PGLQI DFALF N+L+ +L+ QTT LD   +K+LKG+LGGT
Sbjct:  134 KKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.470e-23
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = -1
Query:  144 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGT 365
            +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L  +LVE TTFL DA VK+LKG+LGGT
Sbjct:  137 RGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAEVKKLKGVLGGT 210          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  141 KKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGTG 368
            K G +M+FPQGLLHFQ+N+G   A   V+F+S +PGLQI DFALFAN LS +LV  TTFL  ATVK LKG+LGGTG
Sbjct:  132 KPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPATVKTLKGVLGGTG 207          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.218e-22
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = -1
Query:  144 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGT 365
            +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L  +LVE TTFL D  VK+LKG+LGGT
Sbjct:  137 RGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEEVKKLKGVLGGT 210          
BLAST of CN181610 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = -1
Query:  141 KGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSYQLVEQTTFLDDATVKRLKGILGGTG 365
            KG + +FPQGLLHFQ N+G   A+ F +++S NPGLQI D+ALFANNL    V + TFL +A V+RLK   GG+G
Sbjct:  145 KGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTSYVVKGTFLAEAEVRRLKSKFGGSG 219          
The following BLAST results are available for this feature:
BLAST of CN181610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AB19A_PRUPE6.929e-2570.67Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL814_ORYSJ7.661e-2466.22Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL31_ARATH1.707e-2367.11Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
ABP20_PRUPE4.965e-2366.67Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
AB19B_PRUPE4.965e-2365.33Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL33_ARATH8.470e-2368.92Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_BRANA1.887e-2265.79Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GLP1_SINAL3.218e-2267.57Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL813_ORYSJ1.828e-1756.00Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181610 ID=CN181610; Name=CN181610; organism=Citrus sinensis; type=EST; length=368bp
TATTTATTCAGAACAAAGATAGGGGAAGTCATTTTAGAGAAAATACTAAC
TCGTGAATTCCAACAATCAACCATTTTAGCAACTAAATGAAATTAAGAAC
TCAAAACTACAAATGAAGAATGTGGTAACTAATAAGCCTAGCCGGTGCCA
CCAAGGATACCCTTGAGCCTCTTCACCGTAGCATCGTCAAGGAAAGTGGT
CTGCTCCACCAATTGGTAAGACAAGTTGTTGGCAAATAACGCGAAATCGG
TGATTTGGAGTCCAGGATTCGGGCTGTTGAAGCTAACAAAACCGAGGGCT
CCGTCCGCGCCGGAATTTACTTGAAAATGCAACAACCCTTGTGGAAAGAT
CATGATATCTCCCTTCTT
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