CN181609

Overview
NameCN181609
Unique NameCN181609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.017e-93
Identity = 140/160 (87.50%), Postives = 151/160 (94.38%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 65.4698 bits (158), Expect = 1.017e-93
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.326e-93
Identity = 140/160 (87.50%), Postives = 151/160 (94.38%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171          

HSP 2 Score: 65.4698 bits (158), Expect = 1.326e-93
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 199          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 2.257e-93
Identity = 139/160 (86.88%), Postives = 150/160 (93.75%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 65.855 bits (159), Expect = 2.257e-93
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 5.012e-93
Identity = 137/158 (86.71%), Postives = 148/158 (93.67%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMG+
Sbjct:   13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170          

HSP 2 Score: 65.4698 bits (158), Expect = 5.012e-93
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  169 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 198          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 5.012e-93
Identity = 138/158 (87.34%), Postives = 147/158 (93.04%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 170          

HSP 2 Score: 65.855 bits (159), Expect = 5.012e-93
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLG
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 198          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.113e-92
Identity = 138/160 (86.25%), Postives = 151/160 (94.38%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 65.4698 bits (158), Expect = 1.113e-92
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.894e-92
Identity = 136/156 (87.18%), Postives = 146/156 (93.59%), Query Frame = 1
Query:  103 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:    5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 160          

HSP 2 Score: 67.0106 bits (162), Expect = 1.894e-92
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLG
Sbjct:  159 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 188          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 2.470e-92
Identity = 139/160 (86.88%), Postives = 151/160 (94.38%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 171          

HSP 2 Score: 62.3882 bits (150), Expect = 2.470e-92
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AG PLGEV DPLYPGGSFDPLG
Sbjct:  170 GAVEGYRVAGEPLGEVVDPLYPGGSFDPLG 199          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 4.204e-92
Identity = 138/160 (86.25%), Postives = 148/160 (92.50%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 67.0106 bits (162), Expect = 4.204e-92
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GA+EGYR+AGGPLGEVTDPLYPGGSFDPLG
Sbjct:  171 GAIEGYRVAGGPLGEVTDPLYPGGSFDPLG 200          
BLAST of CN181609 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 3.526e-91
Identity = 137/160 (85.62%), Postives = 148/160 (92.50%), Query Frame = 1
Query:   97 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGS 570
            F GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMG+
Sbjct:   13 FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172          

HSP 2 Score: 65.4698 bits (158), Expect = 3.526e-91
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 2
Query:  566 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLG 655
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLG
Sbjct:  171 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 200          
The following BLAST results are available for this feature:
BLAST of CN181609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB24_TOBAC1.017e-9387.50Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.326e-9387.50Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC2.257e-9386.88Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC5.012e-9386.71Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC5.012e-9387.34Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC1.113e-9286.25Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_CUCSA1.894e-9287.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_NICPL2.470e-9286.88Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB27_TOBAC4.204e-9286.25Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP3.526e-9185.63Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181609 ID=CN181609; Name=CN181609; organism=Citrus sinensis; type=EST; length=655bp
GAGGCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTTCTGCTTCTCA
ATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCG
TCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGT
GGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAG
CCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCG
AGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGAC
ACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACT
CGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCT
TCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGG
TTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGG
GAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCC
AGGTGGTCTTGATGGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCC
GCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGT
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