CN181577

Overview
NameCN181577
Unique NameCN181577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181577_ssr227 microsatellite CN181577_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPMS_XENLA (RNA-binding protein with multiple splicing OS=Xenopus laevis GN=rbpms PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  272 DNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            ++ N    +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F     A AAK+AL  + FD E    L  E AK N
Sbjct:    9 EHNNNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAKAN 98          
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPS2_MOUSE (RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  296 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A AAK+AL  + FD E    L  E AK N
Sbjct:   22 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKAN 103          
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPS2_HUMAN (RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  296 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            +EVRT+F++GLP D+K REL  L R   GYE S +     +P+GF +F +   A AAK+AL  + FD E    L  E AK N
Sbjct:   28 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKAN 109          
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPMS_MOUSE (RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  287 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E    L  E AK N
Sbjct:   18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRIEFAKAN 102          
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPMS_HUMAN (RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  287 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            +  +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E    L  E AK N
Sbjct:   18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKAN 102          
BLAST of CN181577 vs. ExPASy Swiss-Prot
Match: RBPMS_CHICK (RNA-binding protein with multiple splicing OS=Gallus gallus GN=RBPMS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  296 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 541
            +EVRT+F++GLP D+K REL  L R   GYE S +    ++P+GF  F +   A AAK+AL  + FD E    L  E AK N
Sbjct:   19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKAN 100          
The following BLAST results are available for this feature:
BLAST of CN181577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RBPMS_XENLA1.249e-1242.22RNA-binding protein with multiple splicing OS=Xeno... [more]
RBPS2_MOUSE2.131e-1245.12RNA-binding protein with multiple splicing 2 OS=Mu... [more]
RBPS2_HUMAN2.131e-1245.12RNA-binding protein with multiple splicing 2 OS=Ho... [more]
RBPMS_MOUSE3.635e-1243.53RNA-binding protein with multiple splicing OS=Mus ... [more]
RBPMS_HUMAN3.635e-1243.53RNA-binding protein with multiple splicing OS=Homo... [more]
RBPMS_CHICK3.635e-1245.12RNA-binding protein with multiple splicing OS=Gall... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181577 ID=CN181577; Name=CN181577; organism=Citrus sinensis; type=EST; length=629bp
GGCGGAACGAAAAAGAGAATATACCGGACTTGTACGGGCAGCTAAGTCAA
ATTCGAGCCACAAAAGTTTCTCGCTCTGTGTCTCTTCGTTATCTCACCGT
CTCTGTTAGCTTAGGTAATTTCTAGGGTTTGGTTCGCACGTGCGTAATAT
CTACGACATGGCAGGCGCTGGAATCCACACTTATCACCAGCAATGGCCAC
CGGCACCAGCTCCGCCCCCTCCTCCGGCCGCCGCCGCCGCAGCACCACCC
CCACCTCCCCCAGTTCCCTACGATAACACCAACCGGATCGCTCACGATGA
GGTGCGCACGATATTCATTACTGGTCTGCCTGACGATGTGAAGGAGAGAG
AACTGCAAAACTTACTGAGATGGCTGCCTGGTTATGAGGCTTCACAAGTG
AACTATAAGGGAGAAAAACCCATGGGTTTTGCTCTCTTCTCAACTGCCCA
GCTGGCAGTTGCTGCCAAAGATGCCCTTCAGGAAATGATATTTGATGCTG
AGACAAAGTCTGTGCTCCACACAGAAATGGCCAAGAAAAATCTTTTTGTT
AAGAGAGGAATAGTTTGCAGATACTAATGCATATGATCAAAGTAAACGGT
TGCCAACTGGTGGTGATTATACACATACT
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