CN188623

Overview
NameCN188623
Unique NameCN188623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:603..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.064e-65
Identity = 134/184 (72.83%), Postives = 146/184 (79.35%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            QTSFFQVLNIP KINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+GVSMVT+L+LAIS PTLA APHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                              ESD DMGFSLFD
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 6.005e-65
Identity = 123/142 (86.62%), Postives = 136/142 (95.77%), Query Frame = -1
Query:  277 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 702
            QTSFFQVLNIP KINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+S PTLA APHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.843e-65
Identity = 131/182 (71.98%), Postives = 147/182 (80.77%), Query Frame = -1
Query:  157 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLF 702
            QTSFFQVLNIP KINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+GVSM+TAL+LAIS PT+A APHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                             ESDGDMGF LF
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.892e-64
Identity = 121/142 (85.21%), Postives = 136/142 (95.77%), Query Frame = -1
Query:  277 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 702
            QTSFFQVLNIP KINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFASG+SMVT+LALA+S PTLA APHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 8.672e-64
Identity = 125/183 (68.31%), Postives = 144/183 (78.69%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            QTSFFQVLNIP KINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFASGVSMV +++LAIS PT+A APHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                             ESDGD+G SLFD
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 126/183 (68.85%), Postives = 142/183 (77.60%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            QTSFFQVLNIP KINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+GVSMV +L+LAIS PTLA  PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DPSKF                             ESD +MGFSLFD
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.027e-56
Identity = 122/185 (65.95%), Postives = 134/185 (72.43%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            QTSFFQVLNIP KINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA GVS       +   P  + APH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF                               ESD +MGF LFD
Sbjct:  137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 86/142 (60.56%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  277 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 702
            +TSFFQ L I  KI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F  GV  + ++ L I  PTLA  PH  IN YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.461e-43
Identity = 89/183 (48.63%), Postives = 119/183 (65.03%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F  GV  V ++ L I  PT+A  PH  +N YK V+AVA+ T+Y+FP A+KVK +LADPS F                             ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
BLAST of CN188623 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.102e-42
Identity = 91/183 (49.73%), Postives = 118/183 (64.48%), Query Frame = -1
Query:  154 QTSFFQVLNIPPKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISPPTLAVAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 702
            +TSFFQ L I  KI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F  GV  + ++ L I  PT+A  PH  +N YK V+A+A+ T+YSFP ADKVK +LADPS F                             ESD DMGF LFD
Sbjct:  134 KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF-VVAAPVAETAAAPAASAAPAKEEKEESEESDDDMGFGLFD 315          
The following BLAST results are available for this feature:
BLAST of CN188623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_SOYBN2.064e-6572.8360S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH6.005e-6586.6260S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH7.843e-6571.9860S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH3.892e-6485.2160S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_ORYSJ8.672e-6468.3160S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE1.384e-6168.8560S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU1.027e-5665.9560S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ICTPU7.632e-4460.5660S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK6.461e-4348.6360S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_RANSY1.102e-4249.7360S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006G23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188623 ID=CN188623; Name=CN188623; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTATTGTCCTAAATAAAGGATTATATAAAACCCTTTGGA
AACTGAGTCTACAAAAAGCATTAAGAAAATAAACCTTACAAAACCAAAAA
CATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCAC
TTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGGGGGGG
CGTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCG
CCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTA
CTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAA
CAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAACTGCC
AGGGTTGGGGGGGAGATGGCAAGTGCCAAAGCGGTGACCATTGATACACC
TGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTG
GGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAA
GAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCC
CACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAG
TACCCTTGTTAATCTTGGGGGGAATGTTAAGCACCTGGAAGAAGGAGGTC
TG
back to top