CN181561

Overview
NameCN181561
Unique NameCN181561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1756 contig Csv1_Contig1756:275..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_NEUCR (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-51 PE=2 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 1.325e-100
Identity = 168/218 (77.06%), Postives = 193/218 (88.53%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCP+TV NVETVAV+PTI RRG +WFAGFGR+ N GTKLFC+SGHVN PCTVEEEMSIP++ELID+HCGGVRGGWDNLLAVIPGGSS P+LPKHICD  LMD+DALK  QSGLGTAA+IVMDKSTDVV AI+RLS+FY+HESCG+CTPCREG+ W   IM+R + G  +  EIDMLQE+TKQ+EGHTICALG+A AWP+QGLIRHFRPELE RI++ A
Sbjct:  249 GCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQGTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHICDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKWTEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRKFA 466          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_ASPNG (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Aspergillus niger GN=NUO51 PE=3 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 3.856e-100
Identity = 167/218 (76.61%), Postives = 195/218 (89.45%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCP+TVTNVETVAV+PTI+RRG  WF+ FGR+ N+GTKLFC+SGHVN PCTVEEEMSI L+++IDRHCGGVRGGWDNLLAVIPGGSS P+LPK ICDD LMD+DALK  QSGLGTAAVIVMDKSTD+V AI+RLS FYKHESCG+CTPCREG+ W   +M+R++ G A+  EIDMLQE+TKQ+EGHTICALG+A AWP+QGLIRHFRPELE RI+E++
Sbjct:  251 GCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNAGTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTICDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKWTMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIREYS 468          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 6.578e-100
Identity = 169/216 (78.24%), Postives = 193/216 (89.35%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 652
            GCPTTVTNVETVAV+PTILRRG  WFA FGR  N+GTKLFC+SGHVN PCTVEEEMSIPL+ELID+HCGGV GGWDNL  VIPGGSSVP+LPK+ICD+VLMD+D L+  +SGLGTAAVIVM+K TD++ AIARLS FYKHESCG+CTPCREG GWL+ I +RL  GNAK +EID L+E+++QIEGHTICALGDAAAWPVQGLIRHFRPE+E RIK+
Sbjct:  254 GCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICDNVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLYDITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQ 469          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.087e-94
Identity = 163/218 (74.77%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFAGFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4)

HSP 1 Score: 345.895 bits (886), Expect = 1.087e-94
Identity = 163/218 (74.77%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFAGFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus GN=Ndufv1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.419e-94
Identity = 163/218 (74.77%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFAGFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.854e-94
Identity = 163/218 (74.77%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFAGFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Bos taurus GN=NDUFV1 PE=1 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 4.130e-94
Identity = 162/218 (74.31%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFA FGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R+++ A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_MACFA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 5.394e-94
Identity = 162/218 (74.31%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WFAGFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYK+ESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454          
BLAST of CN181561 vs. ExPASy Swiss-Prot
Match: NDUV1_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.045e-94
Identity = 161/218 (73.85%), Postives = 184/218 (84.40%), Query Frame = 2
Query:    5 GCPTTVTNVETVAVSPTILRRGPDWFAGFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGRCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 658
            GCPTTV NVETVAVSPTI RRG  WF+GFGR+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGW+NLLAVIPGGSS PL+PK +C+ VLMD+DAL   Q+GLGTAAVIVMD+STD+V AIARL  FYKHESCG+CTPCREG  W+  +M R   G+A+  EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++  A
Sbjct:  237 GCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454          
The following BLAST results are available for this feature:
BLAST of CN181561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NDUV1_NEUCR1.325e-10077.06NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]
NDUV1_ASPNG3.856e-10076.61NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]
NDUV1_DICDI6.578e-10078.24NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PANTR1.087e-9474.77NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_HUMAN1.087e-9474.77NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MOUSE1.419e-9474.77NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PONPY1.854e-9474.77NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_BOVIN4.130e-9474.31NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MACFA5.394e-9474.31NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_GORGO7.045e-9473.85NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001C01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181561 ID=CN181561; Name=CN181561; organism=Citrus sinensis; type=EST; length=658bp
GAGGGGTTGTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTC
CCACCATTTTAAGGCGTGGACCGGACTGGTTTGCCGGTTTTGGCAGGAAG
AACAATTCTGGTACAAAATTGTTTTGTGTGTCGGGCCATGTGAATAAGCC
TTGCACAGTTGAAGAGGAGATGAGTATTCCCCTCAAGGAGTTGATAGATA
GACACTGTGGTGGTGTTCGAGGTGGATGGGATAATTTACTTGCAGTAATA
CCAGGGGGTTCTTCAGTTCCTTTGCTTCCCAAACATATATGTGATGATGT
GCTGATGGATTATGATGCTCTGAAGGCTGTTCAATCAGGATTGGGAACTG
CTGCTGTGATTGTCATGGACAAATCAACTGATGTTGTCGATGCAATTGCT
AGGCTCTCATACTTCTATAAGCACGAAAGCTGTGGGCGGTGCACTCCATG
CAGGGAGGGAACAGGATGGCTTTGGATGATCATGGAAAGATTGAAGGTTG
GAAATGCAAAGTTGGAGGAGATTGATATGCTTCAGGAGGTGACCAAGCAG
ATTGAAGGGCACACAATCTGTGCACTGGGTGATGCAGCTGCTTGGCCTGT
TCAGGGTCTCATACGACATTTTAGGCCTGAGCTTGAGAGAAGGATCAAAG
AGCATGCT
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