CN181541

Overview
NameCN181541
Unique NameCN181541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:325..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181541 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42
Identity = 94/201 (46.77%), Postives = 113/201 (56.22%), Query Frame = -1 
Query:  209 PNESWXXXXXXXXXXXXXXXXXLGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARL--NRNERKRLFSLINDQPTVFEVVTERXXXXXXXXXXXXXXXXXXXXXSNDGQVKSNPKLAXXXXXXXXXXXXE------------TLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSMKRGR 769
            PNE W                 LGINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV                        S+    +S  K +            E            T CG+CG +Y ADEFWI CD+CE WFHGKCVKITPA+AE+IKQYKCPSCS KR R
Sbjct:   54 PNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CN181541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.682e-4246.77PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181541 ID=CN181541; Name=CN181541; organism=Citrus sinensis; type=EST; length=769bp
GGGCCCCCAATTCACTATTTATAGTAAAATCTTAAGGATTCATCTGGGCA
GAAGCCCTTCAAAGCAACTTGTATGAACAAACATCACGACAAATTCATTA
CATAACTTTTTTAACTTTTAAAAGTTGACATTTCTATACTATGTCAGCCA
CAGAAGGAACGCTCTTTGAACCACTCCAATGGTAAATCGGTTTTAATGAC
TACTACTGCCTGCCTCTCTTCATGCTGCAAGATGGGCATTTGTATTGCTT
AATATTCTCAGCCTTAGCGGGTGTTATCTTCACACACTTCCCATGGAACC
ACCTCTCACAGATGTCACAGCCAATCCAAAACTCATCTGCGTTGTAATTT
CCACCGCAGCTGCCACAAAGTGTTTCACTATGTTCATCCTCCTCGTCATC
GAAACTCTCATCTGCTAGCTTAGGGTTACTTTTCACTTGGCCATCATTTG
ATCTCTTAGTGCTGCCGCGAGATTTGCTGCTACTATCCACACTGGGTTTA
TCTTTTATAGGCTTCCTTTCTGTTACAACTTCAAACACAGTAGGTTGATC
ATTGATCAAGCTAAACAGACGTTTCCTTTCATTGCGGTTAAGACGAGCTC
CAAGATAAAAAGCCACTGAAAGCAACCATGAATCAGTGTGCACTGCAACC
AAAGACAGCCAGTCCTTCCTGTTCATCCCATCTCTCGCAAAATTAATCCC
AAGTGCCGGCTCAGGAAGCTCCGGCGGAACTTCCTCTGCCGGCAACGTCA
CTTCCCACGACTCGTTAGG
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