CN188587

Overview
NameCN188587
Unique NameCN188587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188587 vs. ExPASy Swiss-Prot
Match: ALS3_ARATH (Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thaliana GN=ALS3 PE=1 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 5.328e-99
Identity = 178/209 (85.17%), Postives = 200/209 (95.69%), Query Frame = -3
Query:  117 GFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD 743
            GFVLQFIF+Q+N GWIILAYLFMV VAGYTAGQRA+HVPRGKYVAG SILAGT++TM +LV+LNVFPFTPRY+IP+AGM+VGNAMTVTGVTMK+LRDDIK+QLNLVETALALGATPRQAT QQVKR+LVI+LSPVLD+ KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNM++GA+TVSSI STYLCWP+FFTKAYQL++ VF +D
Sbjct:   65 GFVLQFIFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVFPFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKRALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITSTYLCWPSFFTKAYQLQTHVFSSD 273          
BLAST of CN188587 vs. ExPASy Swiss-Prot
Match: YBBM_ECOLI (UPF0014 inner membrane protein ybbM OS=Escherichia coli (strain K12) GN=ybbM PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.088e-35
Identity = 73/201 (36.32%), Postives = 125/201 (62.19%), Query Frame = -3
Query:  141 GFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 743
            G+VL++IFS D+    +L  LF+   A + A +R+K++ +    +  +I  G  +T+ +L++     F P  +IP+AGM+ GNAM   G+    L   +  +   ++  L+LGATP+QA+   ++ S+  AL P +D+AKTVGL+SLPG M+G+I  G  P++AI+ QI+V  ML+  +++S+I++ YL +  F+   +QL
Sbjct:   51 GYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQL 251          
BLAST of CN188587 vs. ExPASy Swiss-Prot
Match: YJKA_BACSU (UPF0014 membrane protein yjkA OS=Bacillus subtilis GN=yjkA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.059e-30
Identity = 62/202 (30.69%), Postives = 127/202 (62.87%), Query Frame = -3
Query:  138 GFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLE 743
            G+VL  IF  D+  +I+L  L M+ VA     +R K+     +   A++     VT  +L+ L++ P T RY+IP++GM++GN+M ++ + + RL  ++ ++   ++  L+LG TP+Q+ ++ +  ++ +++ P L++ KT+GL+ LPG MTG I+ GA P++A++ Q++++   + ++ ++ ++ + L +P+ FT   QL+
Sbjct:   46 GYVLSLIFRGDHPVFILLMVLLMLAVAAQNVIKRKKNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVLSSLFLNRLNSEVGVRKEEIQLILSLGGTPKQSIQRILTSAMKMSMIPTLESQKTLGLVQLPGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLFTVHQQLK 247          
BLAST of CN188587 vs. ExPASy Swiss-Prot
Match: Y1647_SYNY3 (UPF0014 membrane protein slr1647 OS=Synechocystis sp. (strain PCC 6803) GN=slr1647 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.310e-24
Identity = 67/207 (32.37%), Postives = 113/207 (54.59%), Query Frame = -3
Query:  141 GFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAG---ASILAGTAVTMLMLVVLNVFP---FTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 743
            G+ L  +FS DN   ++L    M+ +A   A  R    PR K + G    S+ A TA+++   +V+ + P   ++P+Y+IP+ GM++G  M    +  +RL   I+     +ET L LGATP QA     + ++  +L P ++    VGL+SLPG +TG ++ G  PL A   QI++M +++  +T+S+I  T   +  +F +  QL
Sbjct:   53 GYFLAVVFSLDNPWAVLLVLAIMLTIAAVVARNRIN--PRSKSLFGWLWLSLGASTAISLGYALVVIIQPPQWYSPQYLIPLTGMILGQTMNSASLAGERLASAIQQNPREIETHLCLGATPGQAIASYRRAAIRASLIPTVNQMMVVGLVSLPGMLTGQVLAGGDPLNASVYQILIMFLILLTNTLSTIAVTATVYRQYFNQHQQL 257          
BLAST of CN188587 vs. ExPASy Swiss-Prot
Match: Y938_METJA (UPF0014 membrane protein MJ0938 OS=Methanocaldococcus jannaschii GN=MJ0938 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.254e-23
Identity = 62/193 (32.12%), Postives = 113/193 (58.55%), Query Frame = -3
Query:  171 GFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASI--LAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 743
            GFVL +IFS    G  ++  + M+ +A Y   +      + K      I  L  T V++ +L +  V  F P Y+IP+ GM++GN M    + + ++ D +K + +++   LALGAT  +A +  +K ++  A+ P ++  K+VG+I +PGAM GM++ GA+P+ A ++QI++M M++ ++ +S I+  YL +
Sbjct:   53 GFVLLYIFSFGMVGAFLMIGV-MITLASYLIMREINLKNKTKLFICLFITFLTTTIVSLAVLTIPKVVKFEPIYVIPLMGMVIGNTMNTIHLALDKIIDMVKSERDILWGYLALGATEIEALRPFIKNAVKSAVIPQMNRTKSVGVIFIPGAMVGMLLSGANPIYAAEIQIIIMWMILSSAVISGILICYLMY 244          
The following BLAST results are available for this feature:
BLAST of CN188587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALS3_ARATH5.328e-9985.17Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thalia... [more]
YBBM_ECOLI7.088e-3536.32UPF0014 inner membrane protein ybbM OS=Escherichia... [more]
YJKA_BACSU1.059e-3030.69UPF0014 membrane protein yjkA OS=Bacillus subtilis... [more]
Y1647_SYNY34.310e-2432.37UPF0014 membrane protein slr1647 OS=Synechocystis ... [more]
Y938_METJA1.254e-2332.12UPF0014 membrane protein MJ0938 OS=Methanocaldococ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188587 ID=CN188587; Name=CN188587; organism=Citrus sinensis; type=EST; length=745bp
TTTTGAGGCCACTNTAACTTTGCTATGGGGATAAAACAATTCATAATCCA
CCCCTTTGAGGCATTACATTAATTTAAAGGGGACTGAGCAGTGGGAATAA
AATTATAAAAGCCTCAATCTGTACGGAAGACCTTACTTTCCAACTGATAT
GCTTTGGTAAAGAAGGCAGGCCAACAGAGGTATGTGGACATGATGCTGCT
AACTGTGGAAGCGCCAATAAGCATGTTCATTACAACAATCTGCAGTTGAA
TGGCTTCCAGAGGAGAAGCTCCTCCCATTATCATGCCAGTCATTGCGCCG
GGAAGCGAGATGAGACCCACAGTTTTGGCATTATCCAGAACTGGAGACAG
TGCAATGACCAGAGACCTCTTCACCTGCTGCTTTGTTGCCTGTCTCGGTG
TTGCGCCCAGAGCCAATGCCGTCTCCACCAAGTTCAACTGAATCTTGATA
TCATCTCGAAGCCTTTTCATTGTAACCCCAGTTACTGTCATTGCATTTCC
AACCATCATTCCTGCGACTGGGATGATGTATCTTGGGGTAAAAGGGAAGA
CGTTTAGTACCACAAGCATAAGCATTGTCACTGCCGTTCCTGCCAGAATA
GAAGCTCCGGCGACATACTTCCCACGGGGTACATGTTTAGCTCGTTGACC
GGCTGTATAACCAGCAACAATGACCATGAAAAGGTAAGCTAAAATAATCC
ATCCTCTGTTATCCTGACTGAAAATGAACTGAAGAACAAACCCAA
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