CX077104

Overview
NameCX077104
Unique NameCX077104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CITSI (Putative membrane protein ycf1 OS=Citrus sinensis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.186e-82
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL
Sbjct: 1627 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 1776          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_GOSHI (Putative membrane protein ycf1 OS=Gossypium hirsutum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.550e-50
Identity = 97/150 (64.67%), Postives = 116/150 (77.33%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SIQRGEM+L IL+ +K   L+EL K G+LII+P RLSVKNDGQF LYQ + I LVHKNK +I +RYQEK Y+DK  F EFIA+HQKMT N++KNHYDL VPE IL P  RRELR  I FNS+++NGM +N VF NN K  G+VL KNK+L
Sbjct: 1690 SIQRGEMNLDILMIQKDLTLRELMKKGILIIDPVRLSVKNDGQFILYQTISILLVHKNKHQINQRYQEKNYIDKNHFYEFIARHQKMTENKDKNHYDLFVPENILSPNHRRELRIRISFNSRDKNGMHRNAVFLNNVKNCGQVLTKNKHL 1839          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_GOSBA (Putative membrane protein ycf1 OS=Gossypium barbadense GN=ycf1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.550e-50
Identity = 97/150 (64.67%), Postives = 116/150 (77.33%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SIQRGEM+L IL+ +K   L+EL K G+LII+P RLSVKNDGQF LYQ + I LVHKNK +I +RYQEK Y+DK  F EFIA+HQKMT N++KNHYDL VPE IL P  RRELR  I FNS+++NGM +N VF NN K  G+VL KNK+L
Sbjct: 1687 SIQRGEMNLDILMIQKDLTLRELMKKGILIIDPVRLSVKNDGQFILYQTISILLVHKNKHQINQRYQEKNYIDKNHFYEFIARHQKMTENKDKNHYDLFVPENILSPNHRRELRIRISFNSRDKNGMHRNAVFLNNVKNCGQVLTKNKHL 1836          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_MORIN (Putative membrane protein ycf1 OS=Morus indica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.912e-48
Identity = 93/148 (62.84%), Postives = 116/148 (78.38%), Query Frame = -2
Query:    8 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNK 451
            SIQRGE++L +L+ +K F L EL K G+L+IEP RLS KN+GQF +YQ +GI+LVHK+K  I +RY+EKG VD K+FDEFI+KHQKMT NR+KNHYDL VPETIL P+ RRELR LICFNS+N+NG+  N  F N  K    VL+K+K
Sbjct: 1658 SIQRGEINLDLLMIQKNFILTELIKKGILLIEPVRLSRKNEGQFIMYQTIGISLVHKSKHTINQRYREKGLVDTKNFDEFISKHQKMTENRDKNHYDLFVPETILSPRHRRELRILICFNSRNRNGIPSNAFFCNENKVKSPVLNKSK 1805          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_EUCGG (Putative membrane protein ycf1 OS=Eucalyptus globulus subsp. globulus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.852e-43
Identity = 92/150 (61.33%), Postives = 109/150 (72.67%), Query Frame = -2
Query:    5 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLL-VPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKN 451
            SIQRGEMSL ILIT+K   L EL K G+LIIEP RLS+KNDGQ  +YQ + I+L HK+K KI + Y+EK YV K + D+ IA+H KM  NR KN YDLL VPE +L  KRRRELR  ICFNS+ +NG+ KNPVF NN K  G  LDK K+
Sbjct: 1676 SIQRGEMSLDILITQKDLTLTELMKKGILIIEPIRLSIKNDGQLIMYQSLNISLFHKSKPKINQIYREKSYVAKINLDKSIARHPKMAENRYKNDYDLLFVPEKVLSTKRRRELRIRICFNSRKRNGIHKNPVFCNNVKNWGEFLDKRKH 1825          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_VITVI (Putative membrane protein ycf1 OS=Vitis vinifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.200e-42
Identity = 87/152 (57.24%), Postives = 114/152 (75.00%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTK--GGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            +IQRGEMSL ++   K   L EL K   G+ IIEP RLSVKNDGQF +YQ +GI+LVHK+K +  +RY+E+ YVD K+ D+F A+ QKM GN++KNHYDLLVPE IL P+RRR+ R LICFN +N++G+ +NPVF  NG    + LD+NK+L
Sbjct: 1687 AIQRGEMSLDLIPVHKDLTLTELMKMKRGIFIIEPIRLSVKNDGQFIMYQTIGISLVHKSKYQTNQRYREERYVDNKNCDKFSARCQKMIGNKDKNHYDLLVPENILSPRRRRKFRILICFNLRNRSGVARNPVFC-NGNSCNKFLDENKHL 1837          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CALFG (Putative membrane protein ycf1 OS=Calycanthus floridus var. glaucus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 7.779e-42
Identity = 88/152 (57.89%), Postives = 112/152 (73.68%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFF--NNGKGGGRVLDKNKNL 451
            SIQRGEM L +++ +K   L EL K G+LIIEP RLS+K DGQF +YQ +GI+LVHKNK +  +RY+EK YVD+  FD  IA+H KM  NR +N YDLLVPE IL P+RRRELR LI FNS N+N + +N VFF  NN K  G+ LD++K++
Sbjct: 1623 SIQRGEMRLDVMLIQKDLTLTELIKRGILIIEPVRLSIKWDGQFIMYQTIGISLVHKNKHQTNRRYREKRYVDENYFDGSIAQHGKMLVNRAENDYDLLVPENILSPRRRRELRILISFNSGNRNVVDRNLVFFNGNNVKNFGQFLDEDKHI 1774          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_BUXMI (Putative membrane protein ycf1 OS=Buxus microphylla GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.016e-41
Identity = 88/152 (57.89%), Postives = 110/152 (72.37%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNG--KGGGRVLDKNKNL 451
            SIQ GEMS  I+  +K   + EL K G+LIIEP RLS+K DGQF +YQ + I+LVHKNK++   R +EK YVDK  FDE IA+H+KM G  ++NHY+LLVPE I  P+RRRELR  ICFNS N+N + +NPVFFN    K  GR LD+NK+L
Sbjct: 1657 SIQSGEMSPDII--QKDLTITELIKKGLLIIEPVRLSIKRDGQFIMYQTISISLVHKNKQQTNGRCREKRYVDKNYFDESIARHEKMVGTGDENHYELLVPENISSPRRRRELRIRICFNSGNKNFVDRNPVFFNENKVKHCGRFLDENKHL 1806          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_NASOF (Putative membrane protein ycf1 OS=Nasturtium officinale GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.956e-41
Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK KI KRY++K Y++KK  ++ I K+Q  T NR KNHYD  VPE IL PKRRRE R LICFN K +N   +N  F  N +    VLD  K+L
Sbjct: 1600 SIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQRIIYRTIGISLVHKNKHKINKRYKKKSYIEKKTIEKSITKYQNKTVNRKKNHYDFFVPENILSPKRRREFRILICFNLKKKNARDRNSRFNKNIQNLTTVLDTKKDL 1749          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_OLIPU (Putative membrane protein ycf1 OS=Olimarabidopsis pumila GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.042e-41
Identity = 84/150 (56.00%), Postives = 106/150 (70.67%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK KI+KRY++K Y+DKK  ++ I K+QK T NR KN+YD  VPE IL PKRRRE R LICFN K +    +N  F  N +    VL K K+L
Sbjct: 1592 SIERGEMSLDILMIEKNFTFAKLMKKGILIIEPIRLSVQNDGQLIIYRTIGISLVHKNKHKISKRYKKKSYIDKKKIEKSITKYQKKTVNRKKNNYDFFVPENILSPKRRREFRILICFNLKKKTVRDRNSRFDKNIQNWTTVLHKKKDL 1741          
The following BLAST results are available for this feature:
BLAST of CX077104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YCF1_CITSI1.186e-82100.00Putative membrane protein ycf1 OS=Citrus sinensis ... [more]
YCF1_GOSHI4.550e-5064.67Putative membrane protein ycf1 OS=Gossypium hirsut... [more]
YCF1_GOSBA4.550e-5064.67Putative membrane protein ycf1 OS=Gossypium barbad... [more]
YCF1_MORIN1.912e-4862.84Putative membrane protein ycf1 OS=Morus indica GN=... [more]
YCF1_EUCGG1.852e-4361.33Putative membrane protein ycf1 OS=Eucalyptus globu... [more]
YCF1_VITVI1.200e-4257.24Putative membrane protein ycf1 OS=Vitis vinifera G... [more]
YCF1_CALFG7.779e-4257.89Putative membrane protein ycf1 OS=Calycanthus flor... [more]
YCF1_BUXMI1.016e-4157.89Putative membrane protein ycf1 OS=Buxus microphyll... [more]
YCF1_NASOF2.956e-4156.00Putative membrane protein ycf1 OS=Nasturtium offic... [more]
YCF1_OLIPU5.042e-4156.00Putative membrane protein ycf1 OS=Olimarabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54D07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54D07-G14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077104 ID=CX077104; Name=CX077104; organism=Citrus sinensis; type=EST; length=452bp
CAAGATTTTTGTTTTTATCCAAAACGCGGCCGCCGCCCTTTCCGTTATTA
AAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTGAAACA
AATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGTTTCAG
GAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTTTTTGA
TGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCCTTTTC
TTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGCAATAC
CTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACAAACGA
CGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGAGCGAA
CTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTGAATAG
AG
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