CN188580

Overview
NameCN188580
Unique NameCN188580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 70/118 (59.32%), Postives = 94/118 (79.66%), Query Frame = 3
Query:   45 MAFCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 386
            MAFC KLG L+RQN    G  P  S++ ++R MS   TKLF+GGLSWGTDD+SL++AF++FGD+ +AKVI +RE+G+SRGFGFV ++   +A++A S MDG+ELNGR+IRV+ ANDRP
Sbjct:    1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.998e-27
Identity = 62/114 (54.39%), Postives = 86/114 (75.44%), Query Frame = 3
Query:   45 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 386
            MAFC KLG   +Q    P +S++ ++R+MS   TKL++GGLS GTD+ SLK+AFS+F  +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P
Sbjct:    1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 3
Query:  129 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 383
            M+  + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+   A  AM+GQ+L+GRNI V+ A  R
Sbjct:    1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 3
Query:  129 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 383
            M++ + + FVGGL+W T+D SL++AFS FGDIT++K+I +RE+G+SRGFGFVT+   +S   A   M+GQEL+GRNI V+ A  R
Sbjct:    1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = 3
Query:  138 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 386
            S  +++VG LSWG DD +LKE FS  G++ +AKV+ +R+SG+SRGFGFVTY S++  + A  +++G +L+GR+IRVS A +RP
Sbjct:  205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  138 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 389
            S  +++VG LSWG DD +L+  FS  G + EA+VI +R+SG+S+GFGFVTYDS++   +A  ++DG +L+GR IRVS A  RPP
Sbjct:  202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  138 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 386
            S  +++VG LSWG DD +LKE FS  G++ +AKV+ +R+SG+SRGFGFVTY S +  + A  +++G +L+GR+IRVS A +RP
Sbjct:  206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 42/79 (53.16%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  147 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 383
            + FVGGL+W T++ +L++AF+NFG + ++KVIT+RE+G+SRGFGFVT+ S +S   A   M+G+EL+GRNI V+ A  R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  138 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 389
            S  +++VG L+WG D  +L+  FS  G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  138 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 389
            S  +++VG L+WG D  +L+  FS  G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275          
The following BLAST results are available for this feature:
BLAST of CN188580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GRP2_ARATH1.720e-3359.32Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
RT19_ARATH6.998e-2754.3940S ribosomal protein S19, mitochondrial OS=Arabid... [more]
GRP_HORVU5.738e-2154.12Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP1_DAUCA5.738e-2154.12Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
ROC2_NICSY1.082e-1951.8129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_ARATH1.082e-1952.38Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICPL3.149e-1951.8131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP2_SORBI9.161e-1953.16Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
ROC1_NICSY1.196e-1851.1929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL1.196e-1851.1930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188580 ID=CN188580; Name=CN188580; organism=Citrus sinensis; type=EST; length=739bp
GCCGTAAATCCTTTGCTTCTGTTTCTCTTGCTTAAGAGACAAAAATGGCA
TTTTGTGGCAAACTTGGGATGCTAGTTAGGCAGAATGGCCAGGCTCCAAA
GGCATCTTTGATAAATGCGGTTCGATTCATGTCGCAATCACAAACTAAGC
TTTTTGTTGGAGGGCTATCTTGGGGAACCGATGACAGTTCTCTCAAGGAA
GCGTTTTCCAACTTTGGCGATATCACTGAAGCAAAGGTTATTACTGAGAG
AGAATCTGGGAAGTCAAGAGGATTTGGGTTCGTTACCTACGACTCTAATG
AATCTGCCAGCTCGGCACAGTCTGCAATGGATGGCCAGGAGCTAAATGGG
AGAAACATTCGGGTGTCTTTTGCCAATGACAGACCTCCTCGCTCTGACGG
TGGCTATGGTGGAGGGAATGATGGATCTTATGGCGGCAACCGTGGCGGTT
ACAGAGTCAACTACAGAGGAGGGGATGATGGTTTTTAAGGGGATTCTATT
CAATTTTTGGGCGTGCTTTAACTAGGAATTAAAGTTTTATGTTTGTTTTA
AGGATGGAAGTTTAGCACTACTGAATTTGTTATTATGTTGGCTTTTATTT
ATCAGCCTTGCCCCCTTAATTGCATATTATATAGCTATGCAGGCCAGGTA
AGATGTTTGACACTGCTATGCGTCCGTCATTTGTTTGACATTTTTTCGGT
CATGGTTAAAACATATTAATGGTTTGTTGAAAAAAAAAA
back to top