CN188579
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.930e-32 Identity = 68/116 (58.62%), Postives = 92/116 (79.31%), Query Frame = -3 Query: 359 FCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 694 FC KLG L+RQN G P S++ ++R MS TKLF+GGLSWGTDD+SL++AF++FGD+ +AKVI +RE+G+SRGFGFV ++ +A++A S MDG+ELNGR+IRV+ ANDRP Sbjct: 3 FCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 7.855e-26 Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = -3 Query: 359 FCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 694 FC KLG +Q P +S++ ++R+MS TKL++GGLS GTD+ SLK+AFS+F +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P Sbjct: 3 FCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21 Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616 M+ + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+ A AM+GQ+L+GRNI V+ A R Sbjct: 1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21 Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616 M++ + + FVGGL+W T+D SL++AFS FGDIT++K+I +RE+G+SRGFGFVT+ +S A M+GQEL+GRNI V+ A R Sbjct: 1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19 Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = -3 Query: 359 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 607 S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S++ + A +++G +L+GR+IRVS A +RP Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19 Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = -3 Query: 356 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 607 S +++VG LSWG DD +L+ FS G + EA+VI +R+SG+S+GFGFVTYDS++ +A ++DG +L+GR IRVS A RPP Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.197e-19 Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = -3 Query: 359 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 607 S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S + + A +++G +L+GR+IRVS A +RP Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.301e-19 Identity = 42/79 (53.16%), Postives = 62/79 (78.48%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 + FVGGL+W T++ +L++AF+NFG + ++KVIT+RE+G+SRGFGFVT+ S +S A M+G+EL+GRNI V+ A R Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.215e-18 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = -3 Query: 356 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 607 S +++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.215e-18 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = -3 Query: 356 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 607 S +++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275 The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bpback to top |