CK940136

Overview
NameCK940136
Unique NameCK940136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK940136 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:  215 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 505
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ SRGFGF++ +TVEEA   I  L+     GR++ V++A            Y+G
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
The following BLAST results are available for this feature:
BLAST of CK940136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YDC1_SCHPO1.669e-1136.08Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004741_B06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940136 ID=CK940136; Name=CK940136; organism=Citrus sinensis; type=EST; length=812bp
GGGGAAGATCTTGTGAGATCGAAAGAGAAGCGAACTCTAACCCAAGGAAG
AATCTCGAAACACACAGGCAAGAGAGTAGATTTTACAAGTACTTGATACG
ATGTCTTACTCTAGGAGGTCAAGGTATTCACGCTCTTCTTCACCATACAA
TAGATACGGCAGGTCAATGTCTAGGTCAATGTCTCGCAGCCGATCAAGGA
GCCGATCAAGTGATGCGGAAAATCCTGGCAACAATTTGTATGTAACAGGA
TTGTCACCTCGTATCACCAAAAGAGAACTTGAGAAGCATTTTGCAGCTGA
GGGAAAGGTGATTGATGTTCACCTTGTGGTCGATCCGTGGACAAGAGAGT
CTCGTGGTTTTGGGTTTGTTACGATGGCCACAGTTGAGGAGGCTGACCGT
TGCATCAAGTATTTGGATCGTTCTGTTCTTGAGGGTCGCATCATTACTGT
GGAGAGGGCAAGGAGGCGGAGAGGGCGAACTCCCACTCCAGGAAGGTATT
TGGGGCTGAGAACCATTCGTGTCTGTCGTCGATCACCTAGCAACTCTCCT
CCTCGTCGATCTCCAAGCTACTCTCCTTATCGTTGGAGCAGAAGTCGTTC
TCCCAGTTATTCATCTGAACGGAGCAGGGACAGATCGTACTCTCCTGACT
ATAGGAGGAGGAGGCCTTACTCCCCTAATTATAGCCGGCGTAGATCATAC
TCATCTTACTACAGTCGGCGCCGTTCTTATTCTCGTTCCCGTTCCCCTTA
TAGTAGGTCTCCAGATGACCGCGGCTATCGGAGGTGTGACCGTTCTTACT
CTCCATATGACT
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