CK940128

Overview
NameCK940128
Unique NameCK940128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.713e-51
Identity = 101/172 (58.72%), Postives = 128/172 (74.42%), Query Frame = 3
Query:  264 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVIRLTSQQLHGKEDSVGTCS 779
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSIS 177          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.455e-49
Identity = 99/166 (59.64%), Postives = 126/166 (75.90%), Query Frame = 3
Query:  264 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVIRLTSQQLHGKED 761
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.232e-49
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 3
Query:  255 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 722
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.778e-47
Identity = 101/180 (56.11%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  210 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVIRLTSQQ 743
            +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.278e-37
Identity = 78/159 (49.06%), Postives = 109/159 (68.55%), Query Frame = 3
Query:  261 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 710
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.022e-34
Identity = 80/187 (42.78%), Postives = 120/187 (64.17%), Query Frame = 3
Query:  255 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVIRLTSQQLHGKEDSVGTCS 779
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KEDS+   S
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKEDSLAISS 185          
BLAST of CK940128 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.110e-32
Identity = 79/183 (43.17%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  264 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR-LVIRLTSQQLHGKEDSV 767
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  L +    ++L  +E++V
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182          
The following BLAST results are available for this feature:
BLAST of CK940128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUD17_ARATH7.713e-5158.72Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.455e-4959.64Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUDT4_ARATH4.232e-4960.13Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD21_ARATH1.778e-4756.11Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH8.278e-3749.06Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH5.022e-3442.78Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH2.110e-3243.17Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004741_C05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940128 ID=CK940128; Name=CK940128; organism=Citrus sinensis; type=EST; length=787bp
GCGGGGAGGATNNNAAAGAAGCTCTCACCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCAAGTCTCAATATTAAAAGTTTACTTTTGCTTTCAG
TTCGTTCAGACGTTAATTGTTTTTCATCTGAAAGATTGTCTTTCAGCTCC
TTTTGTTTTTTGCTGCTGCGAATATTCCGTAACTAGAGAAGAAAACTATG
GTGGCCTTGGTAGCTCAAGAAACTATTGTATCTCTTGTAACTCCTGAAAA
TGTTGTGGGCAATTTGGTTTCTCGCACCGGCAGGCATTTGCAGCGTTACC
AAAAAGGCCGTCGCCAAGTTGTTGGATGCATACCATATAGATATAAATGC
GTAAAACAAAGCTTGGATATTAATGAGGAGGATCTTGAAGTTCTCGTCAT
CAGTTCACAGAAAGGCAAAGGGATGTTGTTCCCAAAGGGAGGCTGGGAAA
TTGATGAATCCATACAAGAAGCAGCTTTACGAGAAACCATCGAGGAAGCC
GGGGTAACTGGCATCGTTGAGTGTGAATTATTGGGTGAATGGAATTTCAA
GAGCAGAGCACACAACACTGACTATCAAGGATACATGTTCCCATTACTTG
TTCAGGATCAATTAGCGGAGTGGCCAGAGAAGAATGTGCGAAGCAGAAAA
TGGATGAGCGTGGCAGAAGCTAGAAAAGTTTGTCAGCATTGGTGGATGAA
GGAAGCATTAGATAGACTAGTAATACGTCTAACTTCTCAACAACTACATG
GCAAGGAAGATTCTGTAGGAACCTGTTCTTNNNNNNA
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