CN188557

Overview
NameCN188557
Unique NameCN188557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQFVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:   80 PAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.601e-39
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQFVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:   80 PAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.791e-36
Identity = 70/89 (78.65%), Postives = 78/89 (87.64%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            P  DKKQF+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:   80 PTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.218e-36
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQFVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:   80 PAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.385e-35
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQF+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:   79 PAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.363e-35
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQFVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLYIA  LKE+KC
Sbjct:   80 PAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.532e-34
Identity = 69/89 (77.53%), Postives = 75/89 (84.27%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            PAFDKKQFVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:   80 PAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.000e-34
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            P FDKKQF+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:   79 PPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.000e-34
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            P FDKKQFVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:   80 PPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of CN188557 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.412e-34
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = -3
Query:  463 PAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 729
            P FDKKQF+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:   79 PPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of CN188557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
TCTP_HEVBR4.161e-4091.01Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV4.601e-3985.39Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA2.791e-3678.65Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN6.218e-3680.90Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA1.385e-3578.65Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC2.363e-3579.78Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.532e-3477.53Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA2.000e-3476.40Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ2.000e-3478.65Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ3.412e-3477.53Translationally-controlled tumor protein homolog O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188557 ID=CN188557; Name=CN188557; organism=Citrus sinensis; type=EST; length=731bp
CCCCTGCTGCTTAGTGGTTANGTAGCCTGTAAGCTAACTAGCTTTACAGA
AGACCTTCCCTGAAACTTCCCTTGCAAATACTTGTAATATTATTCTGGCT
GGGCTGATGAGTTGAATTCAGCCTCGCGTTTGTATAGTATCCATTGGTGG
TCATCATTAGTTTAATGGCCTGTGGACCAGAAACAGTGTAAATAATTTTC
CAATTGAATGATAAATTTCTTTCTCCAGCAATTTTTTTTTTTTTTTTTTT
TTTAAAACTATTAAGTTATTTGGTAATTCAATCTCAAACCATAAAACCCA
ATAATTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAAA
AACAGCAAGCACAAGTCCCGAGTAAACCAGTACAAAAGATACATAAAAAT
AACCGCGGGCAATAATTAAGAGGAGAACTACAGCAGGCACTTCCTCTTCG
AAGCCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAAA
ATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCCA
TCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCGA
GAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGCC
TCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTAT
GTTACAAACTGCTTCTTGTCAAAAGCAGGTT
back to top