CK940096

Overview
NameCK940096
Unique NameCK940096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.985e-20
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            SR CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct:   18 SRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          

HSP 2 Score: 38.1206 bits (87), Expect = 4.985e-20
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGHSNVWNSHPK YG
Sbjct:    1 MGHSNVWNSHPKNYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  124 P*SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            P SR CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:   16 PGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.267e-14
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            SR+C++CGN H +IRKY +  CRQCFR  AK+IGF+KYR
Sbjct:   18 SRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          

HSP 2 Score: 31.5722 bits (70), Expect = 4.267e-14
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH N+W SHP+ YG
Sbjct:    1 MGHQNIWYSHPRKYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.172e-12
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  124 P*SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            P SR CRVC N H +IRKYGL  CR+CFR  A +IGF K
Sbjct:   16 PGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54          

HSP 2 Score: 34.2686 bits (77), Expect = 2.172e-12
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYGP 127
            MGH N+W SHP+ YGP
Sbjct:    1 MGHENIWYSHPRKYGP 16          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.763e-12
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            SR CR+CGN   +IRKYGL  CRQCFR  ++ +GF KYR
Sbjct:   18 SRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56          

HSP 2 Score: 30.0314 bits (66), Expect = 4.763e-12
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            M H N+WN H +TYG
Sbjct:    1 MSHKNIWNKHSRTYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.039e-12
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:   18 SRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          

HSP 2 Score: 31.9574 bits (71), Expect = 8.039e-12
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH+N+W SHP+ YG
Sbjct:    1 MGHANIWYSHPRKYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.044e-11
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:   18 SRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          

HSP 2 Score: 31.5722 bits (70), Expect = 1.044e-11
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH N+W SHP+ YG
Sbjct:    1 MGHQNIWYSHPRKYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.044e-11
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:   18 SRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          

HSP 2 Score: 31.9574 bits (71), Expect = 1.044e-11
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH+N+W SHP+ YG
Sbjct:    1 MGHANIWYSHPRRYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.762e-11
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:   18 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          

HSP 2 Score: 31.9574 bits (71), Expect = 1.762e-11
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH+N+W SHP+ YG
Sbjct:    1 MGHANIWYSHPRRYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_ASHGO (40S ribosomal protein S29 OS=Ashbya gossypii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.973e-11
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            SR CRVC +   +IRKYGL  CRQCFR  A +IGF KYR
Sbjct:   18 SRQCRVCASHSGLIRKYGLNICRQCFREKANDIGFHKYR 56          

HSP 2 Score: 29.6462 bits (65), Expect = 2.973e-11
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            M H NVW SHP+ YG
Sbjct:    1 MAHENVWFSHPRNYG 15          
The following BLAST results are available for this feature:
BLAST of CK940096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RS29_WHEAT4.985e-2082.0540S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_ARATH5.486e-1582.9340S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_GRIJA4.267e-1464.1040S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC2.172e-1264.1040S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_GUITH4.763e-1261.5440S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_PLUXY8.039e-1264.8640S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SCALT1.044e-1164.8640S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_SPOFR1.044e-1164.8640S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_BOMMO1.762e-1164.8640S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_ASHGO2.973e-1164.1040S ribosomal protein S29 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_F08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940096 ID=CK940096; Name=CK940096; organism=Citrus sinensis; type=EST; length=474bp
GGGGACAATTAGCATTTGCATTGCGGAGAAGAGTGCGGCAGCAGAGCAGA
GCAGAGCAGGACAGGACAGGAGAGAAGAGATGGGTCACTCCAACGTATGG
AATTCGCATCCCAAGACCTACGGCCCTGATCTCGTGCTTGCCGCGTTTGC
GGGAACCCTCATGCGATTATCAGAAAGTACGGCCTCATGTGCTGCAGGCA
GTGCTTCCGCAGCAACGCCAAGGAGATCGGTTTCGTCAAGTACCGCTGAA
GAAGATGGCTGTCAAGGCTTTGCAGTGGACTGTGGAGCATACCTAGGAAT
GGAGAAATTTTCAGTTTTCATGTGATTTCTTTTTAGTTTTTCACAAGTAG
CATAAAGCTTGTGAATCAATTAGAGCTTGAACTTTGTAGATGGATTTCTT
TGCTGTCTTAATATGACTGCCAATCTTATTACTTTAATGTTCTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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