CK940088

Overview
NameCK940088
Unique NameCK940088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.924e-47
Identity = 105/268 (39.18%), Postives = 160/268 (59.70%), Query Frame = 1
Query:   25 SITITMNSTSLSFIAKSIVIFLFINSSTQGVVQYQIEG-AIGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSP--NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            S T+ + +  L F++ S+ +      S+  + +  IE  +  P SF FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +DQ TGIVYFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL+ L  P G  +S D +++L+AE  S +I++YWL+  K GT E   ++P  P N+KR+  G F
Sbjct:    7 SQTMALFTVFLLFLSSSLAL------SSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 264          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.924e-47
Identity = 105/268 (39.18%), Postives = 160/268 (59.70%), Query Frame = 1
Query:   25 SITITMNSTSLSFIAKSIVIFLFINSSTQGVVQYQIEG-AIGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSP--NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            S T+ + +  L F++ S+ +      S+  + +  IE  +  P SF FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +DQ TGIVYFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL+ L  P G  +S D +++L+AE  S +I++YWL+  K GT E   ++P  P N+KR+  G F
Sbjct:    5 SQTMALFTVFLLFLSSSLAL------SSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 262          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47
Identity = 100/221 (45.25%), Postives = 138/221 (62.44%), Query Frame = 1
Query:  145 GPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFA--LTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEXXAQLPGFPDNVKR 801
            GPE+FAFD+ G+G YTGVS G+I+K+   +  ++ FA    S N   C+G      A +   CGRP G+ FN+  GDLY+ADA  GL  + P GGLAT +    +G PF+F + LD+D +TG+VYFT  SS+F     +  +   D TG+L KYDP+TK VTVL+E LS   G A+S DG+++L+++ T   I RYW+K  KAG+ E        PDN+KR
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYL-PETGYVDFAQITESSNSSWCDGTIGTALAGR---CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKR 254          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.127e-46
Identity = 99/221 (44.80%), Postives = 139/221 (62.90%), Query Frame = 1
Query:  145 GPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFA-LTSPNRDG-CEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEXXAQLPGFPDNVKR 801
            GPE+FAFD+ G+G YTGV+ G+I+K+   ++ ++ FA +T+ ++   C+GA    +  K   CGRP G+ FN   GDLY+ADA  GL  +   GGLA  +A    G PF F + LD+D +TG+VYFT  SS F  R+ +  + + D TG+  KYDP+ K VTVL+E LS   G A+S DG+++L+ + T   I RYW+K SKAGT E        PDN+KR
Sbjct:   40 GPEAFAFDSTGKGFYTGVTGGKILKYL-PKKGYVDFAQITNSSKSSLCDGALGTTNVEK---CGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKR 256          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 101/273 (37.00%), Postives = 157/273 (57.51%), Query Frame = 1
Query:   13 LFFLSITITMNSTSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSP--NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSS--QFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            +FF+   + ++S+S S  +  I+  +FI S +             P +F FD+  +G YT V DGR+IK+      +  FA  SP  N+  CE + + +   K  +CGR   + ++  N  +YI D ++ L  VG EGG AT +AT  +G+PF++  ++ +DQ TGIVYFTD SS           ++ + D+TGRLMKYDP+TK+ T+LL+ L  P G  +S DG+++++AE  S RI++YWL+  K G+ E    +P  P N+KR+  G F
Sbjct:   13 VFFMFFLLLLSSSSSSSSSSPILKKIFIESPSYA-----------PNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTDPE---KRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPN-PGNIKRNSDGHF 270          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.637e-38
Identity = 97/233 (41.63%), Postives = 138/233 (59.23%), Query Frame = 1
Query:  133 EGAIGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFR---FCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            E  +GPES A   +G+  YTG +DG+I+K    + R +H  L +  +  C G+ E+     EH CGRPLG+     NG L++ADAY GL +V P  G   ++ +  + I  R   F N LD+ Q    VYFTDSSS++QRR+ + +I+     GR+++YD  TK+V V++ENL FPNG+ L  D   +L+AETT  RI R  +   +K G       LPGFPDN++RS  GG+
Sbjct:   96 ERLVGPESLA--NIGDVFYTGTADGKIVKI---EGRNIH-VLATIGKPPC-GSREH-----EHTCGRPLGIRVGP-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGY 315          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.805e-37
Identity = 94/230 (40.87%), Postives = 132/230 (57.39%), Query Frame = 1
Query:  142 IGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFR---FCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            +GPES A    G+  YTG +DG+I+K            +    +  C+G+ E     +E  CGRPLG+     NG L++ADAY GL KV P  G  T + +  + +  R   F N LD+ Q    VYFTDSSS++QRR+++ +I+     GR+++YD  TK+VTVL+ENL F NG+ L  D   +L+AETT  RI R  +   +K G       LPGFPDN++RS  GG+
Sbjct:   99 VGPESIA--NFGDLIYTGTADGKIVKIEGKSIT----VIARLGKPPCDGSRE-----QEPSCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGY 316          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.207e-35
Identity = 88/230 (38.26%), Postives = 132/230 (57.39%), Query Frame = 1
Query:  142 IGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP---EGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            +GPES A   +G+  +TG +DGR++K  + +   +    + P +   +          E +CGRPLG+     NG L++ADAY GL +V P   E  L  +  T  EG    F N L + Q    +YFTDSSS++QRR+++ +++ G   GRL++YD  T++V VLL+ L FPNGV LS   +++L+AETT  RI R ++    K G       +PGFPDN++ S  GG+
Sbjct:  100 VGPESIAH--IGDVMFTGTADGRVVKLENGEIETIARFGSGPCKTRDD----------EPVCGRPLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGY 316          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.581e-33
Identity = 85/229 (37.12%), Postives = 128/229 (55.90%), Query Frame = 1
Query:  145 GPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGG---LATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            GPES     +G+  +TG +DGR++K  + +   +    + P +   +          E  CGRPLG+     NG L++ DAY GL +V P+     L  +  T  EG    F N L I +    +YFTDSSS++QRR+++ +++ G   GRL++YD  TK+V VLL+ L FPNGV LS + +++L+AET   RI R ++    K G       +PGFPDN++ S  GG+
Sbjct:   61 GPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDD----------EPTCGRPLGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 276          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 85/230 (36.96%), Postives = 129/230 (56.09%), Query Frame = 1
Query:  142 IGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP---EGGLATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            +GPES A   +G+  +TG +DGR++K  + +   +    + P +   +          E  CGRPLG+     NG L++ DAY GL +V P   E  L  +  T  EG    F N L + +    +YFTDSSS++QRR+++ +++ G   GRL++YD  TK+V VLL++L FPNGV LS   +++L+ E    RI R+++    K G       LPGFPDN++ S  GG+
Sbjct:   99 VGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDD----------EPACGRPLGIRAGP-NGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGY 315          
The following BLAST results are available for this feature:
BLAST of CK940088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STSY_RAUSE1.924e-4739.18Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA1.924e-4739.18Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STS1_ARATH4.287e-4745.25Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH2.127e-4644.80Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_CATRO5.240e-4537.00Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
APMAP_DANRE3.637e-3841.63Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_SALSA1.805e-3740.87Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_HUMAN2.207e-3538.26Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_RAT1.581e-3337.12Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN2.697e-3336.96Adipocyte plasma membrane-associated protein OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_E10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940088 ID=CK940088; Name=CK940088; organism=Citrus sinensis; type=EST; length=821bp
GGGGAATACCGTTTGTTTTTTCTCTCTATCACCATCACCATGAACTCAAC
AAGTCTCAGCTTCATCGCTAAAAGCATAGTCATTTTTCTTTTTATCAATA
GTTCTACTCAAGGTGTCGTTCAGTATCAGATAGAGGGTGCAATTGGACCT
GAAAGTTTTGCATTTGATGCACTTGGTGAGGGTCCTTATACCGGCGTATC
CGATGGCCGTATTATTAAATGGCACCACGACCAACGCCGCTGGCTTCATT
TTGCTCTAACCTCCCCAAACAGGGATGGTTGTGAAGGGGCATATGAATAC
GATCATGCGGCAAAGGAGCACATATGTGGGCGTCCGTTAGGGTTGTGCTT
CAATAAAACCAACGGTGATCTCTACATCGCTGACGCTTATTTTGGATTGC
TTAAAGTGGGACCCGAAGGAGGATTGGCCACTGCCGTTGCTACTCAATCA
GAGGGCATTCCTTTCAGATTCTGTAATAGTCTAGACATCGATCAATCCAC
CGGAATCGTCTATTTTACCGACAGCAGTTCACAGTTTCAAAGGAGGAACC
ACATTTCTGTAATACTAAGTGGTGATAAAACAGGAAGGCTAATGAAGTAT
GACCCAGCAACAAAACAAGTAACTGTTCTTCTTGAGAATCTCTCATTTCC
AAATGGGGTGGCTTTGAGTGAAGATGGCAACTACATATTACTTGCAGAGA
CAACAAGCTGCAGAATTCTAAGGTATTGGCTAAAAACATCGAAAGCCGGA
ACAATAGAAATNNTCGCTCAACTCCCAGGGTTTCCAGATAACGTAAAAAG
AAGCCCCAGAGGAGGATTTTG
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