CN188538

Overview
NameCN188538
Unique NameCN188538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188538_ssr567 microsatellite CN188538_ssr567:567..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2673 contig Csv1_Contig2673:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MSDTCGNCDCAD++QCVKKGSSY A  +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  291 TCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 482
            TCGNCDC D+SQCVKKG+SY    VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = -2
Query:  297 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 491
            MSD CGNCDCAD SQCVKKG+S     VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSID--IVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  297 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 491
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -2
Query:  294 MSDTCGNCDCADRSQCVKKGSSYAAAFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 491
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CN188538 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 3
Query:  618 MADQLTDDQISEFKEAFSLFDKDGDRCITTKEL 716
            MADQLTDDQISEFKEAFSLFDKDGD CITTKEL
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKEL 33          
The following BLAST results are available for this feature:
BLAST of CN188538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MT3_CARPA2.205e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC9.587e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.252e-1766.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.808e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.808e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ6.871e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI6.871e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.097e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI4.168e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
CALM_MALDO8.691e-1196.97Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188538 ID=CN188538; Name=CN188538; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTTTTTTTTTTGACTAACATAATACATTAAAATTAAACCCCCCTTA
GGCACGGTCATGGCCATGGCCATATATTACATGACCCTGAAGAAGGAAAC
ACAAAACATTACGAGTGATGGGTGACACAACACGCACATCACTCCACACA
CTAGTAGTAGACCATCATAAAAACGAAGTAGAGAATTTTTCTTTTTTTGT
GTAATCACCCTTACATTATTCTTAACCCCCACAATATTTAGGCACACTTG
CAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGTGACTACCACAA
GTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTCAGC
CTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAAGCTCAAGT
CAGTCTCGACGAAGGCAGCAGCATAGCTGCTTCCCTTCTTCACACACTGG
CTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGATTGA
GCTTAGAACTTAGAACTTAAAACTGGAAATAGAGGGCTCTTTATTGTACG
ATTTTTGTAAGGAAAAAAATAAATAAATACCTATTTCTGAGTTGAAAAAA
CAAACGGAAGAAGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCT
GAGTTCAAAGAGGCCTTCAGCTTGTTTGACAAGGATGGCGACCGTTGCAT
TACCACCAAGGAGCTTG
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