CK940083

Overview
NameCK940083
Unique NameCK940083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_BART1 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.006e-39
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 3
Query:   48 QKQEEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            +  E VV   V+++D +GRAY TG+RK ++ARVWI+PG GK I+N+KEFD YF     R  L +P   T     +D+  TV GGG+SGQ GA+R GIS+AL  +EP+LRP L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   18 EPHENVVPVHVQKLDSQGRAYATGKRKDAVARVWIKPGSGKIIINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_RHOP2 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.452e-38
Identity = 80/133 (60.15%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   81 RQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            ++VD+ GRAY TG+RK ++ARVWI+PG GK IVN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   26 KKVDKFGRAYATGKRKDAVARVWIKPGAGKVIVNSREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_BRUAB (30S ribosomal protein S9 OS=Brucella abortus GN=rpsI PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 79/143 (55.24%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   51 KQEEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            K E      V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  L +P   +   G +D+  TV GGG+SGQ GAVR GIS+AL ++EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   16 KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMILQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_BRUA2 (30S ribosomal protein S9 OS=Brucella abortus (strain 2308) GN=rpsI PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 79/143 (55.24%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   51 KQEEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            K E      V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  L +P   +   G +D+  TV GGG+SGQ GAVR GIS+AL ++EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   16 KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMILQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_BRUA1 (30S ribosomal protein S9 OS=Brucella abortus (strain S19) GN=rpsI PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 79/143 (55.24%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   51 KQEEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            K E      V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  L +P   +   G +D+  TV GGG+SGQ GAVR GIS+AL ++EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   16 KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMILQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_RHOPS (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.437e-37
Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   81 RQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            ++VD++GRAY TG+RK ++ARVWI+PG GK  VN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   26 KKVDKQGRAYATGKRKDAVARVWIKPGAGKVTVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_AZOC5 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.437e-37
Identity = 78/134 (58.21%), Postives = 101/134 (75.37%), Query Frame = 3
Query:   78 VRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            V+++D+ GRAY TG+RK ++ARVW++PG GK IVND+  +VYF     R  + +PF+     G +DV CTV GGG+SGQ GA+R GISRAL  +EP+LR  L+  GFLTRDSRVVERKK G+AKAR+SFQ+ KR
Sbjct:   21 VQKLDKFGRAYATGKRKDAVARVWVRPGTGKIIVNDRPVEVYFARPVLRLIINQPFAAAAREGAYDVVCTVSGGGLSGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVERKKYGRAKARRSFQFSKR 154          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_NITWN (30S ribosomal protein S9 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 79/141 (56.03%), Postives = 100/141 (70.92%), Query Frame = 3
Query:   57 EEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            E       ++VD+ GRAY TG+RK ++ARVWI+PG GK +VN +E DVYF     R  + +P       G +DV CTV GGG+SGQ GAVR G+S+AL ++EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   18 ESEAPKHTKKVDKYGRAYATGKRKDAVARVWIKPGAGKILVNAREVDVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTHFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_NITHX (30S ribosomal protein S9 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 78/141 (55.32%), Postives = 100/141 (70.92%), Query Frame = 3
Query:   57 EEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            E       +++D+ GRAY TG+RK ++ARVWI+PG GK +VN +E +VYF     R  + +P       G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   18 ESEAPKHTKKIDKYGRAYATGKRKDAVARVWIKPGAGKILVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158          
BLAST of CK940083 vs. ExPASy Swiss-Prot
Match: RS9_BARHE (30S ribosomal protein S9 OS=Bartonella henselae GN=rpsI PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 79/144 (54.86%), Postives = 101/144 (70.14%), Query Frame = 3
Query:   48 QKQEEVVKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 479
            +  E +    V+++D +GRAY TG+RK ++ARVWI+PG GK  +N+KEFD YF     R  L +P   T     +D+  TV GGG+SGQ GAVR GIS+AL  +EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   18 ETHENIAPVHVQKLDSQGRAYATGKRKDAVARVWIKPGSGKITINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIIATVAGGGLSGQAGAVRHGISKALTYYEPELRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
The following BLAST results are available for this feature:
BLAST of CK940083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BART12.006e-3956.9430S ribosomal protein S9 OS=Bartonella tribocorum ... [more]
RS9_RHOP26.452e-3860.1530S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_BRUAB1.101e-3755.2430S ribosomal protein S9 OS=Brucella abortus GN=rp... [more]
RS9_BRUA21.101e-3755.2430S ribosomal protein S9 OS=Brucella abortus (stra... [more]
RS9_BRUA11.101e-3755.2430S ribosomal protein S9 OS=Brucella abortus (stra... [more]
RS9_RHOPS1.437e-3759.4030S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_AZOC51.437e-3758.2130S ribosomal protein S9 OS=Azorhizobium caulinoda... [more]
RS9_NITWN1.877e-3756.0330S ribosomal protein S9 OS=Nitrobacter winogradsk... [more]
RS9_NITHX1.877e-3755.3230S ribosomal protein S9 OS=Nitrobacter hamburgens... [more]
RS9_BARHE1.877e-3754.8630S ribosomal protein S9 OS=Bartonella henselae GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_G01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940083 ID=CK940083; Name=CK940083; organism=Citrus sinensis; type=EST; length=845bp
GGGATGAGAAAAATACGAGAAAATCTACCAGAGCTGAAATAGAACGCCAG
AAACAGGAGGAAGTTGTTAAAGCTAGAGTGAGACAAGTAGATGAAAAAGG
AAGGGCTTATGGAACAGGGAGAAGGAAATGCAGTATAGCTCGTGTTTGGA
TTCAACCTGGTGATGGAAAATTCATTGTTAATGATAAAGAATTTGACGTC
TATTTCCCAATGCTTGATCATCGTGCCGCACTTCTTCGACCTTTCTCTGA
GACAAAGACCTTGGGCCTTTGGGATGTCGATTGTACTGTCAAAGGGGGTG
GCGTTTCAGGTCAAGTTGGAGCTGTTAGGCTAGGGATCAGCAGGGCATTG
CAAAATTGGGAACCAGATCTACGTCCTGCACTCAGATCCGCTGGTTTCTT
GACGAGAGATTCACGTGTGGTTGAAAGGAAAAAACCAGGGAAGGCAAAAG
CGAGAAAGAGCTTCCAATGGGTTAAGCGTTAATCGACAATTGGGGCTTCC
ATTTCAATGGCCCACGTTCTATGGAAGTTCAGTTTTGCCTCATTGCAATA
ACTTGTCGAGTCTTAAGAGTATCCAACCGGCTGGGCATGTCCATTCAACA
CGCCCTGCTTCTTGCTTTCTGTACGCACACGGTCATGGAAAAGCTGTGAA
GATTTTTGAGCAGTTTATTTGTTAAACAAAACTGTTTCTAGTTTGTACCC
TTATGTCATCTTTATGTGCAAATACAAGAGAGGAGCATTTGTTGAGCCCT
GAATTTCGGTGTTGACTGTTGAGTACTGTAATGTCTTCGCTTTAAGGACG
ATCGTACAGTATTAGGATTGATTTTACCATTGCTTCTCTTGATTG
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