CN188530

Overview
NameCN188530
Unique NameCN188530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188530_ssr173 microsatellite CN188530_ssr173:173..184. BLAST: Citrus ESTs to Prunus persica proteins V1
CN188530_ssr16 microsatellite CN188530_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6184 contig Csv1_Contig6184:118..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188530 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  352 YAECQKNHAAVVGGYAVDGCREFMPSGEEGPAAALTCAACGCHRSFHRREVDT 510
            Y EC KNHA  +GG+AVDGC EFMPSGE+G   AL CAACGCHR+FHR+E ++
Sbjct:   49 YRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES 101
[Close]
BLAST of CN188530 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  358 YAECQKNHAAVVGGYAVDGCREFMPSGEEGPAAALTCAACGCHRSFHRREV 510
            + EC KN A  +GG+AVDGC EFMP+G EG   AL CAACGCHR+FHR+E+
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125
The following BLAST results are available for this feature:
BLAST of CN188530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH1.004e-1667.92ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH2.735e-1464.71ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188530 ID=CN188530; Name=CN188530; organism=Citrus sinensis; type=EST; length=692bp
TTTTAAAACGGAGAATCATTCATTCATATTCAAGAAAAAACACACTTCCT
CTTTATTTTGACATAAATATGAGATCACAAATTAAGGACCTCTTAGCCAC
TCATGTCAATGAATTAACCCTATAAATCGACAAGGAAAATGAACAATCTC
AAACACGAAAACCAAATTAAAAAGAGAGAGAGAGAAAGTACTTAAGATCA
AAACCCTCAAACCCAGATATATAGAGAAACAAGCAAAGTTAACACATGAC
ATGAATTAACCTCCACTGATTAACAATCCTTGATTAAGCTTTAGTTTCAT
CTCTAGTTAAGTCGCGGTTGAAGACGGTGAAGAGCACTCACACACGACCT
CAGTGTCAACTTCCCTTCTGTGAAAGCTTCTATGGCAGCCACATGCAGCA
CAAGTGAGTGCAGCAGCTGGGCCTTCCTCTCCACTGGGCATGAACTCTCT
GCAACCATCAACAGCATAACCACCGACAACGGCAGCATGATTCTTTTGGC
ACTCTGCATACCTCACACTCCTCACTGTGACAGATGAAGCAGTTGAGTTT
CTTGATGGCTCCTCTCTTCTCAACACCACTTGCCTCTTCCTCATTTTGCT
TGTCCCGAAATTTTTTGGATCCTCTTCCTCTTCTTCAAAACCTTCGAAAT
TTTCTTTAGAATTAAGAAATTGTTTCCCTGAACCAGAATCAG
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