CN188509

Overview
NameCN188509
Unique NameCN188509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.548e-70
Identity = 146/230 (63.48%), Postives = 167/230 (72.61%), Query Frame = 3
Query:   78 MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQ 767
            MSFQDLE+GR  S+ + N   G+QDSTQAVASGIFQINT VSTFQRLVNTLGTPKDTPELREK+HKTRLHIGQLVKDTSAKLK+ASETDH + V+             FQAVLKEFQKAQ+ AAERET YTPFVPQ+ LPSSYTA E+    D+  EQ A L ES+RQE+VLLD                          VNE+FKDLAVLV++QG +IDDIG+HI+NS+
Sbjct:    1 MSFQDLESGRGRSTRKFN--GGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSR 224          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.236e-69
Identity = 143/232 (61.64%), Postives = 165/232 (71.12%), Query Frame = 3
Query:   78 MSFQDLEAGRPVSSLRRNLVNG---KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENS 764
            MSFQDLEAGR  S      +NG   +QD+TQ VASGIFQINT+VSTF RLVNTLGTPKDTPELREK+HKTRL+IGQLVKDTSAKLK+ASETDH   V+             FQAVLKEFQKAQRLAAERET Y P V +  LPSSYT+ E+D++ D+  EQ ALLVES+RQE+VLLD                          V+E+FKDLAVLVH+QG +IDDIG+HI+NS
Sbjct:    1 MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNS 232          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.589e-51
Identity = 119/236 (50.42%), Postives = 150/236 (63.56%), Query Frame = 3
Query:   78 MSFQDLEAGRPVSSLRRNLVNGKQ-------DSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENS 764
            MSFQDLEAG    +  R    G+Q       D +Q VA+GIF+I+TAV++F RLVN++GTPKDT ELR+K+ KTRL I +LVK+TSAKLK+ASE D H   S             FQ+VLKEFQKAQRLAAERE  YTP V + + P+SY A ELD  S R ++Q ALL++SRRQEVV LD                          VN +FKDLA++V+ QG I+DDI S+++NS
Sbjct:    1 MSFQDLEAGTRSPAPNR-FTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNS 234          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.022e-28
Identity = 77/164 (46.95%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  270 HKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIEN 761
            HK  L IGQLVKDTSA L++ASETDH   V+             F+A LKEFQKAQ +  ERET+Y PF P+     S+++ E+DI  DRS EQ  +L+ESRRQE+VLLD                          V E+FKDLAV+V  QGT IDDI   I+N
Sbjct:  154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPK----GSFSSSEVDIGYDRSQEQR-VLMESRRQEIVLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKIDN 311          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 58/206 (28.16%), Postives = 93/206 (45.15%), Query Frame = 3
Query:  159 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 770
            Q ++S I +I    +  QR +N LGTP+D+PELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++EN++V
Sbjct:   16 QRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSG------SFPEDSSKERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEV 215          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: STX7_HUMAN (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 58/206 (28.16%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  159 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 770
            Q ++S I +I       QR +N LGTP+D+PELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++EN++V
Sbjct:   16 QRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSG------SFPEDSSKERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEV 215          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: STX7_RAT (Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 58/206 (28.16%), Postives = 93/206 (45.15%), Query Frame = 3
Query:  159 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 770
            Q ++S I +I    +  QR +N LGTP+DTPELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++E+++V
Sbjct:   16 QRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRVSG------GFPEDSSKEKNFVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 215          
BLAST of CN188509 vs. ExPASy Swiss-Prot
Match: STX7_MOUSE (Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 58/206 (28.16%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  159 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 770
            Q ++S I +I       QR +N LGTP+D+PELR+ + + + +  QL K+T   +K+                        F   L  FQKAQR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++E+++V
Sbjct:   16 QRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRASSRVSG------GFPEDSSKEKNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEV 215          
The following BLAST results are available for this feature:
BLAST of CN188509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SYP22_ARATH5.548e-7063.48Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP23_ARATH1.236e-6961.64Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
SYP21_ARATH2.589e-5150.42Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP24_ARATH4.022e-2846.95Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
STX7_PONAB1.585e-1628.16Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]
STX7_HUMAN3.532e-1628.16Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]
STX7_RAT4.613e-1628.16Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4[more]
STX7_MOUSE2.289e-1528.16Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188509 ID=CN188509; Name=CN188509; organism=Citrus sinensis; type=EST; length=771bp
CCGGAGTCTCTTGTTTCCCGTTGGGCTCTCGCTATCCTTTTGTCCAATCA
ACCATATATCAATCGGCTTTGGAGAAAATGAGCTTTCAAGATCTGGAGGC
GGGGCGGCCGGTGAGTTCGTTGAGGAGAAATTTGGTGAATGGAAAGCAAG
ACTCAACGCAGGCCGTTGCTTCTGGAATCTTCCAGATCAATACCGCCGTC
TCCACGTTTCAAAGACTCGTTAATACGCTTGGGACTCCCAAGGATACGCC
CGAGCTTCGCGAGAAGATACACAAGACAAGGCTACATATCGGGCAATTGG
TGAAGGATACTTCAGCTAAACTTAAACAAGCTAGTGAAACAGATCATCAT
GCTCAAGTTAGTGCCGACAAGAAGATTGCAGATGCTAAACTAGCCAAAGA
TTTTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAAAGGCTTGCTGCTG
AAAGGGAAACAGCATACACTCCTTTTGTTCCACAGGCAGTTCTTCCTTCC
AGCTATACAGCCCATGAACTAGATATAAGTTCAGATAGGAGTGCAGAACA
GCATGCGCTTCTTGTGGAATCTAGAAGACAGGAGGTTGTGCTATTGGACA
ATGAGATTGCCTTCAATGAGGCTATAATTGAAGAGAGAGAGCTCGGAATA
CAAGAAATCCAACAACAAATTGGTGAAGTGAATGAGGTTTTCAAAGATCT
TGCTGTATTAGTCCATGAGCAAGGAACTATCATTGATGATATTGGATCTC
ATATTGAAAATTCCCAAGTAG
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