CX675784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46 Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+ R + F+N +Q QC+SF KP Sbjct: 51 SNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.201e-45 Identity = 78/128 (60.94%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 51 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45 Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45 Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45 Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.494e-45 Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = -2 Query: 363 SKTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYFRCLAFNNQKQGQCMSFFIQKP 755 +KT +NGS+ C + W P NN KFE LSYLP LS D++AK+IDY++K GW P +EFD G V RE S MPGY+DGRYWTMWKLPMFGC DS+ +L EI+ECKK Y Y RCL F+N +Q QC SF + +P Sbjct: 47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.494e-45 Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + C W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+P LEF+ E G+V+RE+ + PGY+DGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.959e-45 Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + +C + W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+P LEF+ E G+V+REN + PGY+DGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++ R + F+N +Q QC+SF KP Sbjct: 53 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 1.016e-44 Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + RC + W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+P LEF+ E G+V+REN+ PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 51 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.328e-44 Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + C + W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177 The following BLAST results are available for this feature:
BLAST of CX675784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675784 ID=CX675784; Name=CX675784; organism=Citrus sinensis; type=EST; length=756bpback to top |