CX675784

Overview
NameCX675784
Unique NameCX675784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+ R + F+N +Q QC+SF   KP
Sbjct:   51 SNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.201e-45
Identity = 78/128 (60.94%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   51 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.568e-45
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.494e-45
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = -2
Query:  363 SKTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYFRCLAFNNQKQGQCMSFFIQKP 755
            +KT +NGS+  C + W P NN KFE LSYLP LS D++AK+IDY++K GW P +EFD  G V RE S MPGY+DGRYWTMWKLPMFGC DS+ +L EI+ECKK Y    Y RCL F+N +Q QC SF + +P
Sbjct:   47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.494e-45
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG +  C   W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+P LEF+ E G+V+RE+ + PGY+DGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.959e-45
Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + +C + W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+P LEF+ E G+V+REN + PGY+DGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++ R + F+N +Q QC+SF   KP
Sbjct:   53 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.016e-44
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + RC + W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+P LEF+ E G+V+REN+  PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   51 SNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.328e-44
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG +  C + W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CX675784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS1_SOLTU5.390e-4660.16Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_SOLTU1.201e-4560.94Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBSC_SOLTU1.568e-4560.16Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.568e-4560.16Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU1.568e-4560.16Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_MARPA3.494e-4559.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN3.494e-4560.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY5.959e-4559.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLLC1.016e-4460.16Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2A_SOLLC1.328e-4460.16Ribulose bisphosphate carboxylase small chain 2A, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64G12-M24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675784 ID=CX675784; Name=CX675784; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTTTTTAGTAAAATACTAGGAATGCATTGGAGCTGATAG
CACAACCATACAAGAAAAAACAATAACTTAAAAAGTAAAGTGAATGCCAG
TGAAAGCCAGCATAGGATGCAATGATGCATATAGAGAGTCAAAACTGCTA
CAAGAAAAGTTATAATAAAACGTCTGGTGTTTCCAACCAGCTGCGCCGAA
AGAAGAACCTTTAAACTGTGTGCTAATCACATGATGTCACACAAATTATG
ATCAAGTCTTTATTATTTAAAACGAAAAGCATCTCCCTAATCAAACAAGC
TGCATTATAGAATTCAACCAAACAAAGTGAGAGAAGTGCTTTTAGGTGCT
AGTGGTGGTGGTTGGTTTCTGGATGAAAAAGGACATGCACTGACCCTGTT
TCTGATTGTTAAATGCCAAGCAGCGAAAATAAGCATTTGGGTATGCTTTT
TTGCACTCTTGTATTTCATTCAGGATTTGAGATGAATCATTGCATCCAAA
CATTGGCAACTTCCACATTGTCCAATACCTCCCATCAAAATACCCTGGCA
TTTTGCTATTCTCCCTGTGCACATATCCCACCTCATCAAATTCAAGGGAA
GGGATCCATCCCTTTTTGAGCATGTAGTCAATCTCCTTTGCAATTGAATC
ATCCGAGAGCGATGGCAGGTAGGAGAGGGCCTCAAACTTTTTGTTATTGA
TTGGATTCCATGTCTTCCTGCATCGAGTTTTTGAACCGTTTGAGACTGTT
TTGCTG
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