CN188507

Overview
NameCN188507
Unique NameCN188507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+++EGT +VGF +S   NN LF+KVLN                NIGKT AVAF  L+S   G I+IA  VFG+ PPINPD
Sbjct:  106 QNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPD 199          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+++EGT +VGF +S   NN LF+KVLN                NIGKT AVAF  L+S   G I+IA  VFG+ PPINPD
Sbjct:  106 QNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPD 199          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+++EGT +VGF +S   NN LF+KVLN                NIGKT AVAF  L+S   G I+IA  VFG+ PPINPD
Sbjct:  107 QNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPD 200          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+++EGT +VGF +S   NN LF+KVLN                NIGKT AVAF  L+S   G I+IA  VFG+ PPINPD
Sbjct:  106 QNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPD 199          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+++EGT +VGF +S   NN LF+KVL                 NIGKT AVAF  L+S   G I+IA  VFG+ PPINPD
Sbjct:  107 QNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPD 200          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = -3
Query:  200 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINP 478
            Q PPH  PRA+EIL+V +GT  VGF  S P +N LFSKVLN+               NIGK  AVAF AL+S  PG I+IA  VFGANP INP
Sbjct:  109 QNPPHTHPRATEILVVEQGTLLVGFVTSNP-DNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINP 200          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PRA+EIL+V  GT  VGF  S P +N LF+KVLN+               NIGK  AVAF AL+S  PG I+IA  VFGANP INP+
Sbjct:  109 QNPPHTHPRATEILVVELGTLLVGFVTSNP-DNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPN 201          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.608e-16
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PR SEIL+++EGT +VGF +S   NN LF+KVL+                N+GK  AVAF  L+S   G I+IA  VFG+NPPI P+
Sbjct:  106 QNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPE 199          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.608e-16
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PR SEIL+++EGT +VGF +S   NN LF+KVL+                N+GK  AVAF  L+S   G I+IA  VFG+NPPI P+
Sbjct:  106 QNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPE 199          
BLAST of CN188507 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.608e-16
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  197 QRPPHFPPRASEILLVLEGTFHVGFGASAPLNNPLFSKVLNKXXXXXXXXXXXXXXFNIGKTKAVAFFALNSPFPGEISIAGGVFGANPPINPD 478
            Q PPH  PR SEIL+++EGT +VGF +S   NN LF+KVL+                NIGK  A+AF  L+S   G I+IA  VFG+NPPI P+
Sbjct:  106 QNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPE 199          
The following BLAST results are available for this feature:
BLAST of CN188507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
GL117_ARATH5.405e-1852.13Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH5.405e-1852.13Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH5.405e-1852.13Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL119_ARATH9.220e-1852.13Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL113_ARATH3.504e-1751.06Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL111_ARATH3.504e-1754.84Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL110_ARATH3.874e-1653.19Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL120_ARATH6.608e-1647.87Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH6.608e-1647.87Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL116_ARATH6.608e-1647.87Germin-like protein subfamily 1 member 16 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188507 ID=CN188507; Name=CN188507; organism=Citrus sinensis; type=EST; length=480bp
GAAGAGGGGTTCAGGAAAAACCTTTTTTTTTAACATTAATTAAAATATGA
AAATCGGGGGCTAACCCAAAAAAGCCCCTAGGGAAAAGGCCTTTTTAATT
AAGGGGCATTAATTCCTTCCCCAAACCCCCATTAAGGAACTTAGGCGGAA
AATCTTTCCCGGGCTTCGGGCCCAACGGGAACCCCTTGGCAAAAAAATCG
GGATTGATTGGGGGATTGGCCCCAAAAACCCCCCCGGCTATGGAAATTTC
CCCGGGGAACGGGCTGTTTAAAGCAAAAAAGGCAACTGCTTTTGTTTTTC
CAATGTTGAATTGGAAAGGAATCAAACCAATTGGAAACCCAAAACCACCC
CCCTTATTCAAAACTTTTGAAAAGAGGGGGTTATTCAGTGGGGCGGATGC
CCCAAAACCGACGTGAAAAGTTCCTTCCAGGACCAACAGGATTTCACTGG
CCCGGGGGGGAAAATGAGGGGGCCTTTGGC
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