CX044093

Overview
NameCX044093
Unique NameCX044093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13851 contig Csv1_Contig13851:420..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 68/150 (45.33%), Postives = 84/150 (56.00%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AVAV++ + G  GT+ FS EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G A+F I  K IPL G NSVIGR +VVH  P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.004e-23
Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AV V++ + G  GTV F+ EGSGPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L NITV  +G ATF I  + IPL G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 62/129 (48.06%), Postives = 79/129 (61.24%), Query Frame = -3
Query:  265 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSPSPDPGDG 615
            MV AVAV+TG+ G +GTV F+ EG GPTT+ GSLSGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G   F +  + IPL G NSV+GR +VVH+  S D G G
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD-SDDLGKG 128          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AVAV++ +N   GT++FS EG+GPTTV G+L+GL PG H   IH  G+ +N  ISTGP F P G +           G L NI V  +G  +F I    IPL GTNS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = -3
Query:  265 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVHSSPSPDPGDG 615
            MV  VAV++ + G  GT+ F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G A F I  K IPL G +S+IGR +VVH+ P  D G G
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 64/150 (42.67%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+TV  +G     I  + IPL G+NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AVAV+  + G KGT+ FS EG GPT+V GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L NIT  ++G+A   +  + IPL G +S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            MV AVAV+  + G KGT+ F+ EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = -3
Query:  265 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLFGTNSVIGRGLVVHSSPSPDPGDG 615
            MV AVAV+  + G  GT+ F+ +G+ PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  K IPL G  S+IGR +VVH+ P  D G G
Sbjct:    1 MVKAVAVLNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX044093 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 62/150 (41.33%), Postives = 82/150 (54.67%), Query Frame = -3
Query:  241 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLFGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 615
            M  AV V++ + G  GTV F+ EG GPTTV G++SGL PG H   +H  G+ +N  +STGP + P G +           G L NITV  +G ATF I  + IPL G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of CX044093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
SODC_IPOBA7.685e-2445.33Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC1_MESCR1.004e-2344.00Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_ZANAE1.712e-2348.06Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_PEA8.497e-2344.00Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_PAUKA1.449e-2245.74Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_ANACO1.893e-2242.67Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC2_ORYSJ7.193e-2241.33Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC4_MAIZE1.227e-2140.67Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC2_SOLLC2.093e-2144.96Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_SPIOL3.570e-2141.33Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15C10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15C10-E19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044093 ID=CX044093; Name=CX044093; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTCTTAAGGACAGTGCACAGCACGCCTGGACTTTT
ATTTATTTTATTTACGGCCACATTCTACAAGGTACAACATATTACAGACA
TGCCCTGGCTTTTATTTATTTTATTATAGCCAGATTTTGATTCGTACAAC
ATATTATTTATTTTATTAAGTATTCAAGACACATTCGACATCATGTCAAA
TGTATTTATTATGGTATGGAGAGAAGCCCCTTCAATAACTGAGACCGATG
GTGCCCCAAGCTACTCCATCACCAGGATCTGGACTGGGACTTGAGTGGAC
TACAAGACCCCTTCCAATAACGGAATTTGTTCCAAAAAGAGGAATCGTCT
TGTAAATTTCAAAAGTAGCAATACCCTCACTAGTAACAGTGATGTTTTCT
AAAAAACCGTCAGCTCCAGCAGGTTTAAAAGGGGGTCCAGTTGATATCCA
ATCATTGCTTATGTTTCCGTAAGTGTGAATAATGAGTGCGTGATCACCAG
GCGGCAAACCAGAGAGGCTTCCTTTCACAGTTGTTGGACCACTTCCTTCA
ACGCTAAAGGAAACAGTTCCCTTGCGACCGTTAGTTCCAGTAATAACTGC
AACTGCATTCACCATTGTGCTGTGTGATATCACAACGCCCTTAGAGAGAG
GAAAATCCT
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