CN188496

Overview
NameCN188496
Unique NameCN188496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188496_ssr160 microsatellite CN188496_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:9..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.821e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.821e-44
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.605e-42
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVWKDY
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.197e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIG IKFKAFDLGGHQIARRVW+DY
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.026e-32
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M+LFDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.258e-32
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++FDWF  ILASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.867e-32
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++FDWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.969e-32
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M+LFDWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDY 84
The following BLAST results are available for this feature:
BLAST of CN188496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1B_BRACM7.821e-44100.00GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1B_ARATH7.821e-44100.00GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_ARATH8.647e-4396.43GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.129e-4296.43GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1_TOBAC5.605e-4296.43GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR2_SOLLC6.197e-4192.86GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_DEBHA4.026e-3275.00Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_LODEL5.258e-3275.00Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_PICGU6.867e-3273.81Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_PICST8.969e-3273.81Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188496 ID=CN188496; Name=CN188496; organism=Citrus sinensis; type=EST; length=843bp
GCATAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAACAAAAATA
AACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATTGGCATCCA
AGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACAATAACTAT
AGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCAAGGGAAAA
AAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGCCAGCCGGA
AAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTACTCTACCCA
ACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAATTTACCACC
TGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGCATCACTCC
CAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAACCCTAAGA
TTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCGTTGATTCC
TCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTCGATCTTTT
TGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGT
TTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAG
GCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCT
TCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAACACAACATC
CCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGAT
TTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTACT
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