CN188439

Overview
NameCN188439
Unique NameCN188439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188439 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.836e-57
Identity = 128/245 (52.24%), Postives = 159/245 (64.90%), Query Frame = 2 
Query:    5 WEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQ-TESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGD----SPXXXXXXXXXXXXXLWAGFQSAVETSTAEKKDSTKAVESS--PQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMH 718
            WEAELPPNYDRVGIENFIRAKYEEKRWVSR  +A SPPR +E++     +R G    HG++ +  NL EERK + A  T+++V A RI+LP+PP+GP QV+   KPQQ  ES   P     Q+ +   A  PPKVDFA+DLF+MLS D    +               WAGFQSA    TAEK  + K  ESS  P S++  EDLFKD+P+L T    ++  KD+K DIMSLFEK+N+VSPFAMH
Sbjct:   96 WEAELPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPPR-VEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNVAATRINLPVPPQGPSQVI---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNLTT----QQAPKDVKGDIMSLFEKTNIVSPFAMH 332
The following BLAST results are available for this feature:
BLAST of CN188439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH6.836e-5752.24Probable ADP-ribosylation factor GTPase-activating... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006A16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188439 ID=CN188439; Name=CN188439; organism=Citrus sinensis; type=EST; length=758bp
CGTTTGGGAAGCTGAGTTGCCTCCAAACTATGACAGAGTTGGAATTGAGA
ATTTCATTCGTGCAAAGTACGAGGAGAAGCGATGGGTTTCTAGAGATGGA
CAAGCAAATTCACCTCCTAGAGGGCTGGAGGAGAAGGCTTCTATTCATTG
GCAGAGACCTGGGGAAAAGAGTGGGCATGGTTACACTGATAATTCTGAAA
ACTTATCTGAGGAAAGGAAGCATGTTCAAGCTCCAAGTACAAAAGATAGT
GTTCCTGCTGCAAGAATTAGTCTTCCACTTCCACCTAGAGGACCTGATCA
GGTTGTTGCCATTACAAAGCCTCAACAAACGGAATCAACAGTGGCACCAG
CTGGGGCAACAAATCAGTCTTCAGATGCTAATCTTGCAGTACCTCCACCC
AAAGTTGATTTTGCTTCTGACCTTTTCGACATGCTATCTGGAGACAGTCC
AAATGAAAATAGCTCTGAGGCTGCTTCTGCGGATGATAATCTTTGGGCAG
GTTTCCAGTCTGCTGTAGAAACATCGACAGCAGAGAAAAAAGATTCAACC
AAAGCAGTAGAAAGTAGTCCCCAGTCTGCCACAGGAATTGAGGACTTATT
TAAAGATTCACCATCTCTTGCAACTCCCTCAAGTTCAGAGAAACCCCAGA
AAGATTTGAAAAATGACATTATGAGCCTTTTTGAGAAGTCCAATATGGTG
TCGCCATTTGCTATGCATCAACAGCAACTCACTATGTTGGCACAGCAACA
GTCCCTCT
back to top