CK939898 | Citrus Genome Database

Overview


Name	CK939898
Unique Name	CK939898
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	684

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939898 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK939898 vs. ExPASy Swiss-Prot

BLAST of CK939898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_VITVI	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Vitis vin...	[more]
ATPH_TRACE	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Tracheliu...	[more]
ATPH_TOBAC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_SOLTU	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum t...	[more]
ATPH_SOLLC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum l...	[more]
ATPH_RANMC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Ranunculu...	[more]
ATPH_PSINU	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Psilotum ...	[more]
ATPH_POPTR	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus t...	[more]
ATPH_POPAL	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus a...	[more]
ATPH_PLAOC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Platanus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004744_C07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_C07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939898 ID=CK939898; Name=CK939898; organism=Citrus sinensis; type=EST; length=684bp
GGGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGA
GGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTG
GGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACT
GCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGG
AAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAA
CAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTT
GTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTAA
GTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCCC
CTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTCA
AAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATAGGTAAA
TTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA