CK939873
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.303e-84 Identity = 156/214 (72.90%), Postives = 185/214 (86.45%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 MSQ FE YERQYCE SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N ARDELLE+GMAD + SADQR RL+MST+ L +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+ KSKKILT M+RRM+R+KW +G+II+VLV AI+ I Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFI 214
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2) HSP 1 Score: 308.145 bits (788), Expect = 3.209e-83 Identity = 153/214 (71.50%), Postives = 184/214 (85.98%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 MS VF+GYERQYCE SA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR+L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD SADQR RL+MSTERL +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI KSKKILT M+RRM+++KW +G+II L+ AI +I Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFII 214
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3) HSP 1 Score: 295.434 bits (755), Expect = 2.152e-79 Identity = 152/215 (70.70%), Postives = 181/215 (84.19%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 MS VFEGYERQYCE S LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEARSLQP+ KA+ LSKLREYK+DLN LK E KRV+S + ++R+EL+ESGMAD VSADQRGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I KSKK+LTAMSRRM+R+KWI+ S+I LV AI+LI Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILI 215
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26 Identity = 68/212 (32.08%), Postives = 119/212 (56.13%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745 MS FEGYE+ + +A ++ K L + KKQ ++ ++ L++A L+ +MDLE R + P + M +++R YK ++ L+ + KR A DE+ + DA S +QR LL +TERL S+ R++ + +ETE++G +L++L R+ + A + L D N+ KS +ILT M RR+ +++ ++ + ++V AIL Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI-----AYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAIL 207
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24 Identity = 62/214 (28.97%), Postives = 121/214 (56.54%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA--DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745 MS FEGYE+ + +A ++ K + L + KKQ ++ ++ L++A L+ +MDLE R + P + M +++R YK ++ L+ + KR ++ + L ++G + + ++ ++R LL +TERL S+ R++ + +ETE++G +L++L R+ + A L D N+ KS +ILT M RR+ +++ ++ + ++V IL Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITIL 214
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24 Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2 Query: 110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 685 MS FEGYE+ + +A ++ K L + KKQ ++ ++ L++A L+ +MDLE R + P + M +++R YK ++ L+ + KR A DE+ + D S +QR LL +TERL S+ R++ + +ETE++G +L++L R+ + A L D N+ KS +ILT M RR Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1_SCHPO (Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe GN=vti1 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19 Identity = 66/212 (31.13%), Postives = 110/212 (51.89%), Query Frame = 2 Query: 125 EGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAA---RDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 E YE++Y A + K S GE + + L++ D +I +M++E + + + ++ ++R Y++ L + +K + +A RDE SG A DQR RLL T RL S+ R+ ES+R ETE +G SIL+DLH QR L H+ L ++ +S + L M+RR++ +++ +II++LV ILL+ Sbjct: 2 ETYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLV 208
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1_YEAST (t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 PE=1 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18 Identity = 68/198 (34.34%), Postives = 105/198 (53.03%), Query Frame = 2 Query: 185 ASALDGELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 A A E Q LS+ T L D+ L+ +MD+E + + +A +KLRE+K +++++KR V+ RD L G +A + DQR +LL + L S DR+K++ R ETE +G I+ DL QR++L +A TL D + KS K L M+RR+ +K+I +II+VL+ ILL+ Sbjct: 19 AKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK---KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLV 211
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_DICDI (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 58/211 (27.49%), Postives = 110/211 (52.13%), Query Frame = 2 Query: 119 VFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751 VFE E+ + ++R+ GE KK + E++ +D+A I +M+ A++ +K L +K ++Y +D+ K EV+ + NQ + + D +QR LL + L+ ++DR+ + + ++E++G +IL DL +Q + + + LH DD I ++KI+T ++RR++ +K I+ II +L+ I LI Sbjct: 3 VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHPQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW-SNAPDDYQSQYDNQRQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSARKIMTGIARRLATNKVILSIIILLLMGIIALI 210
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 3.059e-17 Identity = 66/216 (30.56%), Postives = 109/216 (50.46%), Query Frame = 2 Query: 107 KMSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745 K+ ++F G E G+ + + E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R T R ++ A + M QR LL TE LN +T I+ S R ET+++G I+++L +QR L + L +N+SKS+KIL +MSR+++ +K ++ SII +L AIL Sbjct: 13 KLHEIFRGLH----EDLQGVPERLLGTAGT--EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIIILLELAIL 220 The following BLAST results are available for this feature:
BLAST of CK939873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939873 ID=CK939873; Name=CK939873; organism=Citrus sinensis; type=EST; length=751bpback to top |