CK939873

Overview
NameCK939873
Unique NameCK939873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2229 contig Csv1_Contig2229:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.303e-84
Identity = 156/214 (72.90%), Postives = 185/214 (86.45%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            MSQ FE YERQYCE SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD +  SADQR RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+ KSKKILT M+RRM+R+KW +G+II+VLV AI+ I
Sbjct:    1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFI 214          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.209e-83
Identity = 153/214 (71.50%), Postives = 184/214 (85.98%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            MS VF+GYERQYCE SA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR+L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI KSKKILT M+RRM+++KW +G+II  L+ AI +I
Sbjct:    1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFII 214          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 295.434 bits (755), Expect = 2.152e-79
Identity = 152/215 (70.70%), Postives = 181/215 (84.19%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            MS VFEGYERQYCE S  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEARSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQRGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I KSKK+LTAMSRRM+R+KWI+ S+I  LV AI+LI
Sbjct:    1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILI 215          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 68/212 (32.08%), Postives = 119/212 (56.13%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745
            MS  FEGYE+ +   +A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR        A  DE+    + DA   S +QR  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N+ KS +ILT M RR+ +++ ++  +  ++V AIL
Sbjct:    1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI-----AYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAIL 207          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 62/214 (28.97%), Postives = 121/214 (56.54%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA--DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745
            MS  FEGYE+ +   +A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR      ++   + L ++G +  + ++   ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ KS +ILT M RR+ +++ ++  +  ++V  IL
Sbjct:    1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITIL 214          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2
Query:  110 MSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 685
            MS  FEGYE+ +   +A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR        A  DE+    + D    S +QR  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ KS +ILT M RR
Sbjct:    1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1_SCHPO (Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe GN=vti1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 66/212 (31.13%), Postives = 110/212 (51.89%), Query Frame = 2
Query:  125 EGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAA---RDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            E YE++Y    A +  K    S   GE     +   +  L++ D +I +M++E   +  + + ++  ++R Y++ L   +  +K     +  +A    RDE   SG   A     DQR RLL  T RL  S+ R+ ES+R   ETE +G SIL+DLH QR  L H+   L     ++ +S + L  M+RR++ +++   +II++LV  ILL+
Sbjct:    2 ETYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLV 208          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1_YEAST (t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 68/198 (34.34%), Postives = 105/198 (53.03%), Query Frame = 2
Query:  185 ASALDGELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            A A   E   Q LS+  T L       D+   L+ +MD+E  +     + +A   +KLRE+K     +++++KR     V+   RD L   G  +A  +  DQR +LL +   L  S DR+K++ R   ETE +G  I+ DL  QR++L +A  TL   D  + KS K L  M+RR+  +K+I  +II+VL+  ILL+
Sbjct:   19 AKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK---KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLV 211          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1A_DICDI (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 58/211 (27.49%), Postives = 110/211 (52.13%), Query Frame = 2
Query:  119 VFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLI 751
            VFE  E+ +      ++R+        GE KK  + E++  +D+A   I +M+  A++    +K  L +K ++Y +D+   K EV+     + NQ   +    +   D      +QR  LL  +  L+ ++DR+  + +   ++E++G +IL DL +Q + +    + LH  DD I  ++KI+T ++RR++ +K I+  II +L+  I LI
Sbjct:    3 VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHPQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW-SNAPDDYQSQYDNQRQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSARKIMTGIARRLATNKVILSIIILLLMGIIALI 210          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.059e-17
Identity = 66/216 (30.56%), Postives = 109/216 (50.46%), Query Frame = 2
Query:  107 KMSQVFEGYERQYCEPSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745
            K+ ++F G      E   G+  +    +    E KK+ + +      +A+  + +M+ E R    + +  ++SKLR Y+ DL  L  EV R T        R ++     A   + M     QR  LL  TE LN +T  I+ S R   ET+++G  I+++L +QR  L    + L    +N+SKS+KIL +MSR+++ +K ++ SII +L  AIL
Sbjct:   13 KLHEIFRGLH----EDLQGVPERLLGTAGT--EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIIILLELAIL 220          
The following BLAST results are available for this feature:
BLAST of CK939873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VTI13_ARATH1.303e-8472.90Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI11_ARATH3.209e-8371.50Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI12_ARATH2.152e-7970.70Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
VTI1A_MOUSE1.618e-2632.08Vesicle transport through interaction with t-SNARE... [more]
VTI1A_RAT1.978e-2428.97Vesicle transport through interaction with t-SNARE... [more]
VTI1A_HUMAN5.756e-2432.81Vesicle transport through interaction with t-SNARE... [more]
VTI1_SCHPO3.269e-1931.13Vesicle transport v-SNARE protein vti1 OS=Schizosa... [more]
VTI1_YEAST1.622e-1834.34t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 P... [more]
VTI1A_DICDI1.794e-1727.49Vesicle transport through interaction with t-SNARE... [more]
VTI1B_HUMAN3.059e-1730.56Vesicle transport through interaction with t-SNARE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_D05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939873 ID=CK939873; Name=CK939873; organism=Citrus sinensis; type=EST; length=751bp
GGGGATGCTCAAAAAGACAGAATATTTCACCTGGATCTTCCGGTGCCCAA
TTTCCTTCTCACCGATCGTCTCCACGATCACTTCCCGTTGGTGAGGGATT
CGGGCGAAGATGAGTCAGGTGTTTGAAGGATACGAGCGCCAATACTGCGA
GCCCTCTGCTGGATTATCGCGGAAGTGCACGGCGGCAAGTGCTCTTGATG
GAGAGCTGAAAAAGCAGAAACTTTCTGAAATTAAAACTGGATTGGATGAT
GCTGATGCTCTGATTCGGAAAATGGACCTAGAGGCAAGAAGTTTGCAGCC
GAATGTGAAGGCAATGCTTCTGTCTAAGTTAAGAGAATACAAAACCGATT
TGAACAATTTGAAAAATGAAGTGAAAAGAGTCACATCAGGTAATGTCAAC
CAGGCTGCCCGCGATGAGTTGTTGGAGTCGGGAATGGCAGATGCAATGAT
GGTATCGGCTGATCAAAGGGGAAGATTGTTGATGTCAACAGAGAGACTAA
ACCACTCGACAGACCGAATTAAGGAGAGTAGAAGAACAATGCTGGAAACG
GAAGAGCTTGGAGTCTCGATCCTGCAAGATTTGCATCAACAACGCCAATC
TCTTCTGCACGCTCATAACACGCTCCATGGGGTGGATGACAATATTAGCA
AAAGCAAGAAGATCCTGACAGCCATGTCAAGAAGGATGAGCAGGGACAAA
TGGATCATGGGCTCCATAATCTCAGTTCTTGTCTTTGCTATTTTACTTAT
A
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