EY666044

Overview
NameEY666044
Unique NameEY666044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:27..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY666044 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.158e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:  114 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 554
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of EY666044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.158e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666044 ID=EY666044; Name=EY666044; organism=Citrus sinensis; type=EST; length=816bp
CTTTGAACTTTCCAGTTACCGTTTAAGAGTTCCGAACGGATCAAAGTTTT
CTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAAT
TTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTC
CAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACA
TCGACGGCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCTGTGTC
CGTACAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGT
CTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTTG
TTTGAGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACT
AGCTAAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTC
TGCGTGATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGT
GGGTACTTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGT
GGCTTCTGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTG
ATGGACATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGC
GGGAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAGT
TGGAGGACTGAAAAGCTTTGAAAATCCAAAGAAAAGAATCCTGCGGTTCC
TGCTGCGGAAAAAAAAATCTGGGGGGGTACATTTAAGGGGGGAAGGGCCC
CCATTTTTTGGCACCC
back to top