CK939859

Overview
NameCK939859
Unique NameCK939859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2789 contig Csv1_Contig2789:31..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.739e-94
Identity = 166/214 (77.57%), Postives = 188/214 (87.85%), Query Frame = 3
Query:  102 PLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINH 743
            PLI   S  RNLPDFKKSVKLKYVKLGYHYLITHGM+LFLSPLV+++AAQ+STFS  DL  LWEHLQYNLISV++CS             RPRPVYLV+FSC+KP+ESRKCTK+IFMD+S++TG+FTEENL+FQ+KIL+RSGLG+STYLPEAVLN+PPNP MKEARKEAE VMFGAIDEL AKT+V PKDIGILIVNCSLFNPTPSLSAMV+NH
Sbjct:    8 PLIE--SSDRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNH 219          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.324e-65
Identity = 123/205 (60.00%), Postives = 151/205 (73.66%), Query Frame = 3
Query:  126 SRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            +R LPDF +SV LKYVKLGYHYLI++ + L L PL V+++ + S  +  DL  LW HLQYNL+S+IICS             RPRPVYLVDFSCY P +  K     FM+ SR+TG F +  L+FQ+KILERSGLG+ TY+PEA+  +PP  SM  AR+EAE VMFGA+D LFA T+VKPKDIGIL+VNCSLFNPTPSLSAM++N
Sbjct:   26 TRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVN 230          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.951e-65
Identity = 123/226 (54.42%), Postives = 157/226 (69.47%), Query Frame = 3
Query:   66 NQGKMTEPKP-NTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            NQ +   P P +     P     NLP+F  SV+LKYVKLGYHYLI++ +++ L PL+    A LS+F+  DL  L+  L+++ +S  + +             RPR V+L+DFSCYKP+ S  CT+  FMD+S+  G FTE+NL FQ+KILERSGLG  TY PEA+L +PPNP M+EARKEAE VMFGAID +  KT VKPKDIGIL+VNCSLFNPTPSLSAM++N
Sbjct:    4 NQNQPHRPVPVHVTNAEPNPNPNNLPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMEEARKEAETVMFGAIDAVLEKTGVKPKDIGILVVNCSLFNPTPSLSAMIVN 229          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.884e-62
Identity = 113/204 (55.39%), Postives = 146/204 (71.57%), Query Frame = 3
Query:  129 RNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            R LP+F +SV +KYVKLGYHYLITH   L L PL+ ++  ++S  +  DLY +W HLQYNL++ I  S             RPR VYLVD+SCY P ES +   + FMD S++   F E +L+FQ+KILERSGLG+ TYLPEA+  IPP P+M  AR+E+E VMFGA+D+LF  T + P+DIG+L+VNCSLFNPTPSLSAM++N
Sbjct:   23 RKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIPPRPTMMAAREESEQVMFGALDKLFENTKINPRDIGVLVVNCSLFNPTPSLSAMIVN 226          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.822e-61
Identity = 115/206 (55.83%), Postives = 151/206 (73.30%), Query Frame = 3
Query:  126 SRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHL-QYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            ++ LP+F  SV+LKYVKLGYHYLI++ +++ + P V ++AA  S+FS  DL  L+ HL +++ +S  + +             RPR ++L+DF+CYKP+ S  CT+  FMD+S+  G FTE+NL FQ+KILERSGLG  TY PEA+L +PPNP M EARKEAE VMFGAID +  KT V PKDIGIL+VNCSLFNPTPSLSAM++N
Sbjct:   19 NKKLPNFLLSVRLKYVKLGYHYLISNAVYILILP-VGLLAATSSSFSLTDLTLLYNHLLKFHFLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMSEARKEAETVMFGAIDAVLEKTGVNPKDIGILVVNCSLFNPTPSLSAMIVN 223          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.997e-54
Identity = 106/207 (51.21%), Postives = 146/207 (70.53%), Query Frame = 3
Query:  129 RNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIV-AAQLSTFSFQDLYD-LWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINH 743
            R LPDF +SV LKYVKLGYHYLI H ++L   P++V+V +A++ + S ++++  LW+   Y+L +VI                RPR VYL+DF+CYKP +  K TK  F++ +R +G F EE L F+K+IL+ SG+GD TY+P ++ +     +MKE R+EA  V+FGA+DELF KT VKPKD+G+L+VNCS+FNPTPSLSAMVINH
Sbjct:   37 RRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSREEIWKKLWD---YDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSISSSENITTMKEGREEASTVIFGALDELFEKTRVKPKDVGVLVVNCSIFNPTPSLSAMVINH 240          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.089e-51
Identity = 104/210 (49.52%), Postives = 135/210 (64.29%), Query Frame = 3
Query:  129 RNLPDFKKSVKLKYVKLGYHY---LITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEH--LQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINH 743
            R LPD   SVKLKYVKLG H    + T   FL + PL   V  QL+  +F    +LW +  +Q +  + + C              R +PVYLVDFSCYKPE+ RK +   F+  +   G+FT++ +QFQ++I  R+GLGD TYLP  + + PP  +M EAR EAEAVMFGA+D LF KT +KP ++GILIVNCSLFNPTPSLSAM++NH
Sbjct:   32 RRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNH 241          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 99/206 (48.06%), Postives = 137/206 (66.50%), Query Frame = 3
Query:  123 PSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            P   +P+F  SVKLKYVKLGY YL+ H +   L P++ IVA +L     +++ ++W  LQ++L+ V+  S             +PR +YLVD+SCYKP  + +     FM+ SR+      ++++FQ +ILERSGLG+ T LP A+  IPP P+M  AR EA+ V+F A+D+LF KT +KPKD+ ILIVNCSLF+PTPSLSAMVIN
Sbjct:    2 PQAPMPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRVPFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLFSPTPSLSAMVIN 207          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.798e-46
Identity = 92/191 (48.17%), Postives = 124/191 (64.92%), Query Frame = 3
Query:  168 YVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            YVKLGYHYLITH   L   PL+ ++   +S  S   L      L YN    I                RPR +YL+D+SCY P  S+K + + FM+ S +   F+E +L+FQ+KIL RSGLG+ TYLP+++ +IPP P+M  AR+EAE V+FGA+D LF  T + P++IG+L+VNCSLFNPTPSLSAM++N
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFMNVSLLSLNHL-----QLYYNSTGFIFVITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPPRPTMAAAREEAEQVIFGALDNLFENTKINPREIGVLVVNCSLFNPTPSLSAMIVN 200          
BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.068e-46
Identity = 94/202 (46.53%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  135 LPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN 740
            + DF  SVKLKYVKLGY YLI + + L L P++  VA +L     +++  +   L + L+ ++  S             +PR VYLVD+SCYKP  + +     FM+ SR+      ++++FQ +ILERSGLG+ T LP A+  IPP P+M+ AR EA+ V+F A+++LF  T +KPKDI ILIVNCSLF+PTPSLSAM+IN
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATVAIELLRMGPEEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLFSPTPSLSAMIIN 202          
The following BLAST results are available for this feature:
BLAST of CK939859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS11_ARATH6.739e-9477.573-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS4_ARATH1.324e-6560.003-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS19_ARATH2.951e-6554.423-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS9_ARATH8.884e-6255.393-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH9.822e-6155.833-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS10_ARATH3.997e-5451.213-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS1_ARATH1.089e-5149.523-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS6_ARATH3.167e-5148.063-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS2_ARATH1.798e-4648.17Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS5_ARATH3.068e-4646.533-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_F03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939859 ID=CK939859; Name=CK939859; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTTTTCTCGTTGGTTTCTCTGTCGAGATTCAAGCGATCCG
CCGGTGGGTTTTGACAATCAAGGGAAAATGACTGAGCCAAAACCAAATAC
GCCCTTGATCCCACCAACATCACCATCACGAAATCTCCCTGATTTCAAGA
AGTCAGTTAAGCTAAAATATGTGAAACTTGGATATCATTACCTAATCACT
CATGGAATGTTCCTCTTCCTTTCACCTCTTGTAGTCATAGTTGCCGCGCA
GCTTTCAACGTTTTCTTTTCAGGACCTTTATGATCTTTGGGAGCATCTCC
AGTACAATCTTATTTCTGTTATCATATGCTCAACTTTGCTTGTTTTCCTC
TTGACACTTTACTTTCTCACTCGCCCCCGGCCTGTTTACCTCGTAGACTT
TTCCTGCTACAAGCCTGAAGAATCTCGGAAATGTACTAAAAGGATTTTTA
TGGATCAGTCCCGGATGACTGGTACATTTACAGAGGAAAATCTTCAGTTT
CAGAAGAAGATCCTAGAGCGATCTGGACTTGGTGATTCAACTTACCTTCC
AGAGGCTGTGCTCAACATTCCTCCAAACCCATCAATGAAAGAAGCTAGAA
AAGAAGCTGAGGCTGTGATGTTTGGTGCCATTGATGAGCTTTTTGCAAAA
ACCTCTGTGAAACCCAAGGACATTGGTATCTTGATTGTGAATTGTAGCTT
GTTCAATCCAACGCCATCTCTGTCTGCCATGGTCATCAACCAT
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