CK939850

Overview
NameCK939850
Unique NameCK939850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2236 contig Csv1_Contig2236:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939850 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 65/136 (47.79%), Postives = 77/136 (56.62%), Query Frame = 2
Query:   68 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXX-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 460
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                   C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CK939850 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 2
Query:  209 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 460
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                    C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CK939850 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 48/126 (38.10%), Postives = 59/126 (46.83%), Query Frame = 2
Query:   92 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 460
            +ALFLA+++LF A    C                     S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                   C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CK939850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA2.426e-2647.7914 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC5.246e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE6.852e-1338.10Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004744_G04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939850 ID=CK939850; Name=CK939850; organism=Citrus sinensis; type=EST; length=697bp
GGGGAACAATCTNNNATACTAGTACTACTATATCATAACGGAAAAGCTAG
TGGCTAGGATTTAAGAGATGGGTTCAAAAACCTCAGCTTCACTTGCTCTC
TTTCTTGCAGTCAACATTCTCTTTTTTGCCCTAGTCACTGCCTGTGGCTC
TTGCCCTTCTCCTAAACCAAAACCCAAGCCAAAGCCAACTCCCAGCCCGT
CAGGGGCTTCCTGCCCAAGAGATGCCCTTAAACTAGGTGTATGCGCCAAC
GTGCTTAATGGTTTGCTTAATGTCACTATTGGCACACCCCCGGTACAACC
ATGCTGCACTCTTATTCAAGGCCTTGCTGATCTTGAGGCAGCTGTTTGCC
TTTGCACTGCCATCAAAGCGAACATTTTGGGCATCAACCTTAATATCCCG
CTTTCACTCAGCCTTCTTTTGAACGTCTGTTCAAAGAGTGTGCCCCGTGG
TTTCCAGTGTGCTTAATGATGATCATATATTTCTGTATCTTCGTCTTTAA
TTTAATTTACAGGTTCTGGGATTATGAGTTCTGCACGGTAATGTGTGTTA
CTGGTAATTTCTGTTGTTTAATAATTTTTCATACAGGTGGTTTGATTGCG
AGATGACAGTGAATAAGTCTGATTTGTTTACCTTGGTGGTGGTGTTTTCT
TTATTATGTATTTTTCATTTAACAGAAGATGAATTACTCGTTTGTCT
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